Variant report

Variant	rs34332984
Chromosome Location	chr16:81828868-81828869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr16:81828647-81829850	GM12878	blood:	n/a	n/a
2	POLR2A	chr16:81828677-81829418	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
PLCG2	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12447670	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12918182	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28376278	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4265800	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4889384	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4889385	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81814400-81831800	Weak transcription	Adipose Nuclei	Adipose
2	chr16:81815200-81830000	Weak transcription	Esophagus	oesophagus
3	chr16:81815400-81830600	Weak transcription	Thymus	Thymus
4	chr16:81818000-81830400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr16:81818000-81845000	Genic enhancers	Primary B cells from peripheral blood	blood
6	chr16:81819800-81848800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr16:81820800-81829400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr16:81821000-81829600	Weak transcription	Placenta	Placenta
9	chr16:81822400-81829400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr16:81824600-81829600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr16:81824800-81829600	Weak transcription	Lung	lung
12	chr16:81825000-81829000	Weak transcription	Pancreas	Pancrea
13	chr16:81825200-81832000	Weak transcription	Fetal Kidney	kidney
14	chr16:81825800-81829200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr16:81825800-81829400	Weak transcription	Spleen	Spleen
16	chr16:81826000-81829000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:81826000-81831800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr16:81827200-81831800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr16:81827600-81829200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
20	chr16:81827800-81841800	Weak transcription	Fetal Intestine Small	intestine
21	chr16:81828200-81829000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr16:81828400-81829600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr16:81828600-81829400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr16:81828800-81829000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr16:81828800-81829000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
26	chr16:81828800-81829800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr16:81828800-81831800	Genic enhancers	Primary B cells from cord blood	blood
28	chr16:81828800-81832800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr16:81828800-81833600	Enhancers	Primary monocytes fromperipheralblood	blood

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