Variant report

Variant	rs34340556
Chromosome Location	chr2:127724070-127724071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10194052	1.00[ASN][1000 genomes]
rs10803618	0.94[EUR][1000 genomes]
rs11884053	1.00[ASN][1000 genomes]
rs11885353	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11888349	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11889584	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11889712	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11896939	1.00[ASN][1000 genomes]
rs11898260	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12053575	0.94[EUR][1000 genomes]
rs12993596	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12997058	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12999411	1.00[ASN][1000 genomes]
rs12999613	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12999757	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13010625	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13010652	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13012357	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13013476	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13016474	1.00[ASN][1000 genomes]
rs13024324	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13025747	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13026367	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13026415	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13026430	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13028314	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13031759	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13032401	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13032403	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510528	1.00[ASN][1000 genomes]
rs17014691	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17014698	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1848902	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1848903	1.00[ASN][1000 genomes]
rs1848904	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34018781	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34109617	1.00[ASN][1000 genomes]
rs34167893	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34234549	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34358238	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34643552	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34840409	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34840927	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34859030	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34986734	1.00[ASN][1000 genomes]
rs35002098	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35025489	0.83[AFR][1000 genomes]
rs35143983	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35311329	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35386494	1.00[ASN][1000 genomes]
rs35520257	1.00[ASN][1000 genomes]
rs35523788	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35580772	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35620035	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35686520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36076731	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4662695	0.97[EUR][1000 genomes]
rs4662696	0.97[EUR][1000 genomes]
rs4662697	0.92[EUR][1000 genomes]
rs4663075	0.97[EUR][1000 genomes]
rs4663076	0.97[EUR][1000 genomes]
rs4663077	0.97[EUR][1000 genomes]
rs4663079	0.97[EUR][1000 genomes]
rs4663080	0.97[EUR][1000 genomes]
rs4663081	0.97[EUR][1000 genomes]
rs4663082	0.94[EUR][1000 genomes]
rs4663083	0.94[EUR][1000 genomes]
rs4663085	1.00[ASN][1000 genomes]
rs55962144	0.89[EUR][1000 genomes]
rs56086835	0.83[EUR][1000 genomes]
rs59366032	1.00[ASN][1000 genomes]
rs60133364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60292917	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431209	0.94[EUR][1000 genomes]
rs6431210	0.94[EUR][1000 genomes]
rs6431211	0.94[EUR][1000 genomes]
rs6431212	0.94[EUR][1000 genomes]
rs66792832	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67141267	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6749935	0.97[EUR][1000 genomes]
rs67640318	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7419804	0.94[EUR][1000 genomes]
rs7423317	0.94[EUR][1000 genomes]
rs7556956	0.94[EUR][1000 genomes]
rs7557069	0.94[EUR][1000 genomes]
rs7586551	1.00[ASN][1000 genomes]
rs7600840	1.00[ASN][1000 genomes]
rs9967839	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv999422	chr2:127464647-127956543	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1004930	chr2:127477369-127938234	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv834365	chr2:127616996-127793863	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv834366	chr2:127633714-127784692	Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv528979	chr2:127714880-127724610	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv1000403	chr2:127716846-127725383	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv990429	chr2:127717449-127724785	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127722000-127724200	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:127722000-127727200	Weak transcription	Fetal Muscle Trunk	muscle

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