Variant report

Variant	rs34343201
Chromosome Location	chr6:39240671-39240672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39193484..39195491-chr6:39238843..39241224,2	K562	blood:
2	chr6:39240488..39242738-chr6:39266250..39269664,3	MCF-7	breast:
3	chr6:39239173..39241787-chr6:39269864..39271484,2	MCF-7	breast:
4	chr6:39240523..39244812-chr6:39255962..39259170,3	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1182864	0.86[ASN][1000 genomes]
rs12191604	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12191756	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12198547	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12198665	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2253582	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2395719	0.86[ASN][1000 genomes]
rs2395720	0.85[ASN][1000 genomes]
rs2758863	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2758864	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2758865	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2758866	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2758867	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2758868	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2758869	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2758871	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2758872	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2758874	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2815019	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815020	0.95[ASN][1000 genomes]
rs2815024	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815025	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815026	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815027	0.89[ASN][1000 genomes]
rs2815028	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815029	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815030	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2815031	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815032	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815035	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815036	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815037	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815038	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815039	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2815040	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2815041	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2815042	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2815044	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2815045	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2815061	0.85[EUR][1000 genomes]
rs34170020	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4714233	0.83[ASN][1000 genomes]
rs7746595	0.83[ASN][1000 genomes]
rs9394580	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39236000-39241200	Weak transcription	Colonic Mucosa	Colon
2	chr6:39236000-39241400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:39236600-39241000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:39237800-39241200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:39238200-39241400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:39238400-39243200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:39238600-39243000	Weak transcription	Spleen	Spleen
8	chr6:39239000-39241200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:39239400-39241200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:39239400-39242600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:39239600-39242600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:39239800-39240800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr6:39239800-39241200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:39239800-39242000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:39240000-39240800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:39240000-39240800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:39240000-39241800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:39240000-39242200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:39240200-39241200	Weak transcription	Placenta	Placenta
20	chr6:39240200-39241800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:39240400-39250200	Enhancers	Stomach Mucosa	stomach

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