Variant report

Variant	rs343471
Chromosome Location	chr9:6043593-6043594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10121480	1.00[CEU][hapmap]
rs10733517	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10733520	1.00[CEU][hapmap]
rs10739079	1.00[CEU][hapmap]
rs10758731	1.00[CEU][hapmap]
rs10758732	1.00[CEU][hapmap]
rs10758734	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10815330	1.00[CEU][hapmap]
rs10815335	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1331378	1.00[CEU][hapmap]
rs1331379	1.00[CEU][hapmap]
rs1418740	1.00[CEU][hapmap]
rs1478940	0.90[EUR][1000 genomes]
rs16923578	1.00[CEU][hapmap]
rs186913	1.00[CEU][hapmap]
rs2094756	0.82[EUR][1000 genomes]
rs2150703	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2244053	1.00[CEU][hapmap]
rs2244058	1.00[CEU][hapmap]
rs2291055	1.00[CEU][hapmap]
rs2381360	1.00[CEU][hapmap]
rs343469	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs343480	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs343482	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs343483	0.84[ASN][1000 genomes]
rs343500	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs3739649	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4075225	1.00[CEU][hapmap]
rs419595	0.80[ASN][1000 genomes]
rs4265236	1.00[CEU][hapmap]
rs4389996	1.00[CEU][hapmap]
rs4395943	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs451361	1.00[EUR][1000 genomes]
rs459718	0.96[ASN][1000 genomes]
rs460564	0.96[ASN][1000 genomes]
rs4740833	1.00[CEU][hapmap]
rs4742131	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs56705560	0.90[EUR][1000 genomes]
rs57163723	0.90[EUR][1000 genomes]
rs58595478	0.90[EUR][1000 genomes]
rs6477017	1.00[CEU][hapmap]
rs6477024	1.00[CEU][hapmap]
rs7019606	1.00[CEU][hapmap]
rs7021498	1.00[CEU][hapmap]
rs7024130	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7029833	1.00[CEU][hapmap]
rs7030731	1.00[CEU][hapmap]
rs7032130	1.00[CEU][hapmap]
rs7034210	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7042947	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs7044750	1.00[CEU][hapmap]
rs73384317	0.90[EUR][1000 genomes]
rs73384321	0.90[EUR][1000 genomes]
rs73384330	0.90[EUR][1000 genomes]
rs73384333	0.90[EUR][1000 genomes]
rs73384336	0.90[EUR][1000 genomes]
rs73386610	0.90[EUR][1000 genomes]
rs73386628	0.90[EUR][1000 genomes]
rs73386637	0.90[EUR][1000 genomes]
rs73386652	0.90[EUR][1000 genomes]
rs73386655	0.90[EUR][1000 genomes]
rs73386657	0.90[EUR][1000 genomes]
rs73394748	0.90[EUR][1000 genomes]
rs73394754	0.90[EUR][1000 genomes]
rs7846916	0.86[CHB][hapmap]
rs7857802	0.82[EUR][1000 genomes]
rs7866793	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7868062	1.00[CEU][hapmap]
rs899381	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948847	chr9:5712626-6417677	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv892155	chr9:5825768-6044937	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1015450	chr9:5915640-6114652	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv613205	chr9:6032924-6332901	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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