Variant report

Variant	rs34350840
Chromosome Location	chr9:108165401-108165402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108153124..108158591-chr9:108160157..108165830,7	MCF-7	breast:
2	chr9:108006964..108008816-chr9:108165166..108168105,2	MCF-7	breast:
3	chr9:108154477..108157251-chr9:108163904..108166512,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10081709	1.00[EUR][1000 genomes]
rs10115833	1.00[EUR][1000 genomes]
rs10115879	1.00[EUR][1000 genomes]
rs10116656	1.00[EUR][1000 genomes]
rs11506819	1.00[EUR][1000 genomes]
rs12339205	1.00[EUR][1000 genomes]
rs12348983	1.00[EUR][1000 genomes]
rs13289885	1.00[EUR][1000 genomes]
rs13297419	1.00[EUR][1000 genomes]
rs13298325	1.00[EUR][1000 genomes]
rs13299711	1.00[EUR][1000 genomes]
rs16924487	1.00[EUR][1000 genomes]
rs28545469	1.00[EUR][1000 genomes]
rs34253461	1.00[EUR][1000 genomes]
rs35111325	1.00[EUR][1000 genomes]
rs35275407	1.00[EUR][1000 genomes]
rs35322610	1.00[EUR][1000 genomes]
rs35533765	1.00[EUR][1000 genomes]
rs60502553	1.00[EUR][1000 genomes]
rs6479309	1.00[EUR][1000 genomes]
rs67844420	1.00[EUR][1000 genomes]
rs7034136	1.00[EUR][1000 genomes]
rs7040751	1.00[EUR][1000 genomes]
rs7048586	1.00[EUR][1000 genomes]
rs71494522	0.88[EUR][1000 genomes]
rs71494524	1.00[EUR][1000 genomes]
rs71494526	1.00[EUR][1000 genomes]
rs71494527	1.00[EUR][1000 genomes]
rs7856033	0.88[EUR][1000 genomes]
rs7856524	1.00[EUR][1000 genomes]
rs7860321	1.00[EUR][1000 genomes]
rs7870687	1.00[EUR][1000 genomes]
rs7871855	1.00[EUR][1000 genomes]
rs9299385	1.00[EUR][1000 genomes]
rs9299386	1.00[EUR][1000 genomes]
rs9299387	1.00[EUR][1000 genomes]
rs9632901	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108125000-108166800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:108146800-108177600	Weak transcription	Left Ventricle	heart
3	chr9:108148400-108168000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:108148800-108165600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:108152600-108166000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:108155400-108172600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr9:108155600-108165600	Weak transcription	Brain Anterior Caudate	brain
8	chr9:108156800-108165800	Weak transcription	Fetal Brain Male	brain
9	chr9:108159800-108166000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:108160000-108165800	Weak transcription	Brain Angular Gyrus	brain
11	chr9:108163200-108165600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr9:108163200-108166000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:108163200-108166000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:108163200-108168400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr9:108163800-108165600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:108163800-108167400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:108164000-108165800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr9:108164200-108165600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:108164200-108166400	Enhancers	Brain Hippocampus Middle	brain
20	chr9:108164200-108167200	Enhancers	Brain Substantia Nigra	brain
21	chr9:108164400-108165800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:108164400-108165800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:108164400-108167800	Weak transcription	Fetal Heart	heart
24	chr9:108164600-108167800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:108165200-108165600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr9:108165200-108165800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr9:108165200-108166400	Enhancers	Brain Cingulate Gyrus	brain
28	chr9:108165400-108165800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr9:108165400-108167800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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