Variant report

Variant	rs34352554
Chromosome Location	chr5:15786799-15786800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10044254	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10051629	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10066645	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12515897	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13172068	0.81[AMR][1000 genomes]
rs1394654	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1394656	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1394657	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2938832	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2964268	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4293917	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4461631	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4475263	0.82[EUR][1000 genomes]
rs6554900	0.80[EUR][1000 genomes]
rs6554901	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6554902	0.81[EUR][1000 genomes]
rs6884087	0.80[EUR][1000 genomes]
rs7720498	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	esv2757107	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv2759327	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv2763894	chr5:15714022-15863332	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15764200-15796800	Weak transcription	Aorta	Aorta
2	chr5:15781000-15788600	Weak transcription	Fetal Stomach	stomach
3	chr5:15782600-15789400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:15784200-15792800	Weak transcription	Ovary	ovary
5	chr5:15784600-15787200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:15784600-15787200	Enhancers	Fetal Brain Male	brain
7	chr5:15784800-15787400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:15785000-15787600	Enhancers	Fetal Muscle Leg	muscle
9	chr5:15785400-15787000	Weak transcription	Right Ventricle	heart
10	chr5:15785400-15789400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:15785800-15792600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:15786000-15787000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr5:15786000-15787000	Weak transcription	HSMMtube	muscle
14	chr5:15786000-15787600	Enhancers	Brain Hippocampus Middle	brain
15	chr5:15786000-15789600	Weak transcription	Right Atrium	heart
16	chr5:15786000-15792000	Weak transcription	Brain Angular Gyrus	brain
17	chr5:15786000-15792800	Weak transcription	Spleen	Spleen
18	chr5:15786000-15793800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:15786000-15794200	Weak transcription	Fetal Brain Female	brain
20	chr5:15786200-15787600	Enhancers	Brain Anterior Caudate	brain
21	chr5:15786200-15787600	Enhancers	Brain Cingulate Gyrus	brain
22	chr5:15786200-15788400	Enhancers	Brain Substantia Nigra	brain
23	chr5:15786200-15789800	Weak transcription	Fetal Heart	heart
24	chr5:15786400-15786800	Weak transcription	Left Ventricle	heart
25	chr5:15786600-15787000	Weak transcription	NHDF-Ad	bronchial
26	chr5:15786600-15787800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr5:15786600-15794000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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