Variant report

Variant	rs34360085
Chromosome Location	chr2:177520130-177520131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12991707	1.00[AFR][1000 genomes]
rs12991910	1.00[AMR][1000 genomes]
rs13003616	1.00[AMR][1000 genomes]
rs13017538	1.00[EUR][1000 genomes]
rs1375183	1.00[AMR][1000 genomes]
rs34023598	1.00[AMR][1000 genomes]
rs34384113	1.00[AMR][1000 genomes]
rs35203697	1.00[AMR][1000 genomes]
rs35231950	1.00[AFR][1000 genomes]
rs35428608	1.00[AMR][1000 genomes]
rs35454042	1.00[AMR][1000 genomes]
rs35776851	1.00[AMR][1000 genomes]
rs35951987	1.00[AMR][1000 genomes]
rs55898660	1.00[AFR][1000 genomes]
rs55963234	1.00[AFR][1000 genomes]
rs66809138	1.00[AFR][1000 genomes]
rs71421582	1.00[AMR][1000 genomes]
rs72930241	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834464	chr2:177375743-177534410	Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177516200-177536400	Weak transcription	Ovary	ovary
2	chr2:177517200-177521800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:177519000-177522200	Weak transcription	Fetal Kidney	kidney
4	chr2:177519400-177521800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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