Variant report

Variant	rs34364574
Chromosome Location	chr10:27260191-27260192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD26-1	chr10:27260141-27260497	NONHSAT011876
2	lnc-ANKRD26-1	chr10:27260141-27260497	NONHSAT011877

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10829146	0.91[AMR][1000 genomes]
rs11015388	0.85[AMR][1000 genomes]
rs11015389	0.83[AMR][1000 genomes]
rs11015392	0.83[AMR][1000 genomes]
rs11015393	0.83[AMR][1000 genomes]
rs11015394	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11015398	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11015408	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11015417	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11015422	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11015430	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11015432	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11015434	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12218581	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12219637	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12220671	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12412861	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12413543	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12572726	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12572741	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12573020	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12573785	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12775377	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12783077	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28417098	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34163327	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34273816	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34319528	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34416280	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34479281	0.91[AMR][1000 genomes]
rs34694994	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34974756	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35163810	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35213008	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35606227	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35945396	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3928123	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41279934	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41279936	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41279938	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4749200	0.85[AMR][1000 genomes]
rs4749203	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4749204	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4749205	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4749207	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4749208	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4749209	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4749210	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58651764	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60658625	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66462820	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67387186	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71483822	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629751	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7475282	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9787430	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9787434	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9787435	0.91[AMR][1000 genomes]
rs9787668	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27244800-27271800	Weak transcription	Pancreas	Pancrea
3	chr10:27245600-27267800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:27245600-27270200	Weak transcription	Ovary	ovary
5	chr10:27246000-27269200	Weak transcription	Adipose Nuclei	Adipose
6	chr10:27246600-27273000	Weak transcription	Fetal Stomach	stomach
7	chr10:27247600-27269200	Weak transcription	Spleen	Spleen
8	chr10:27247800-27269200	Weak transcription	Lung	lung
9	chr10:27249600-27268600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:27249800-27271400	Weak transcription	Right Ventricle	heart
11	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
12	chr10:27251800-27265600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:27252000-27260200	Weak transcription	Psoas Muscle	Psoas
14	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:27253600-27264800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr10:27253600-27269000	Weak transcription	Primary T cells from cord blood	blood
17	chr10:27254000-27271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:27255400-27286800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:27255600-27282600	Weak transcription	Brain Anterior Caudate	brain
20	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
22	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr10:27258600-27269800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:27258600-27272800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:27259200-27260200	Flanking Active TSS	GM12878-XiMat	blood

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