Variant report

Variant	rs34369764
Chromosome Location	chr6:11238292-11238293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11233234..11236036-chr6:11236901..11238586,2	K562	blood:
2	chr6:11233234..11235237-chr6:11235574..11238401,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12209631	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11233600-11241800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:11233800-11238400	Weak transcription	Brain Germinal Matrix	brain
3	chr6:11233800-11238600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:11233800-11241600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:11234000-11241800	Weak transcription	NHLF	lung
6	chr6:11234000-11242200	Weak transcription	Brain Anterior Caudate	brain
7	chr6:11234000-11242200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:11234200-11241800	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:11234400-11238600	Weak transcription	Brain Angular Gyrus	brain
10	chr6:11234400-11241600	Weak transcription	Aorta	Aorta
11	chr6:11234400-11241800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:11234400-11241800	Weak transcription	Right Ventricle	heart
13	chr6:11234400-11249600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:11234600-11248400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:11234800-11241600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:11234800-11242200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:11234800-11251400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:11235000-11257200	Weak transcription	Dnd41	blood
19	chr6:11235800-11238800	Enhancers	Fetal Brain Male	brain
20	chr6:11236600-11241600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:11236800-11241600	Weak transcription	Fetal Lung	lung
22	chr6:11236800-11246600	Weak transcription	Left Ventricle	heart
23	chr6:11237000-11241400	Weak transcription	Stomach Mucosa	stomach
24	chr6:11237000-11242200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:11237000-11242200	Weak transcription	Fetal Heart	heart
26	chr6:11237000-11242400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:11237200-11241600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:11237200-11241600	Weak transcription	Fetal Kidney	kidney
29	chr6:11237200-11242200	Weak transcription	Adipose Nuclei	Adipose
30	chr6:11237200-11242400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:11237200-11242400	Weak transcription	NHDF-Ad	bronchial
32	chr6:11237400-11240200	Weak transcription	Fetal Thymus	thymus
33	chr6:11237400-11241000	Weak transcription	Small Intestine	intestine
34	chr6:11237400-11241400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:11237400-11241600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:11237400-11241800	Weak transcription	Placenta	Placenta
37	chr6:11237400-11242800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:11237400-11248000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr6:11237400-11248800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr6:11237400-11251600	Weak transcription	Right Atrium	heart
41	chr6:11237600-11238400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:11237600-11241200	Weak transcription	Fetal Intestine Small	intestine
43	chr6:11237600-11241600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:11237600-11241600	Weak transcription	Lung	lung
45	chr6:11237600-11242600	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr6:11237600-11245000	Weak transcription	GM12878-XiMat	blood
47	chr6:11237600-11246200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:11237600-11248600	Weak transcription	Thymus	Thymus
49	chr6:11237600-11248800	Weak transcription	Spleen	Spleen
50	chr6:11237600-11249000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links