Variant report

Variant	rs34369999
Chromosome Location	chr4:7632038-7632039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7631134..7633371-chr4:7634868..7637393,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13129876	0.90[AMR][1000 genomes]
rs67364316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67667114	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6847389	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71601866	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv461213	chr4:7584560-7637297	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv593618	chr4:7584560-7637297	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv508272	chr4:7591967-7722112	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7618000-7632200	Weak transcription	Right Atrium	heart
2	chr4:7627400-7632400	Weak transcription	Brain Anterior Caudate	brain
3	chr4:7628200-7632400	Weak transcription	Fetal Brain Female	brain
4	chr4:7630800-7632200	Weak transcription	Brain Germinal Matrix	brain
5	chr4:7631200-7633800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:7631200-7635000	Enhancers	Fetal Brain Male	brain
7	chr4:7631400-7632400	Enhancers	NH-A	brain
8	chr4:7631600-7632200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:7631600-7632200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:7631600-7632200	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr4:7631600-7632400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:7631600-7632400	Enhancers	HSMMtube	muscle
13	chr4:7631600-7633200	Flanking Active TSS	HepG2	liver
14	chr4:7631600-7633400	Enhancers	Ovary	ovary
15	chr4:7631600-7634600	Enhancers	Brain Hippocampus Middle	brain
16	chr4:7631600-7635200	Enhancers	Right Ventricle	heart
17	chr4:7631800-7632400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:7631800-7632400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:7631800-7632400	Enhancers	NHDF-Ad	bronchial
20	chr4:7631800-7632400	Enhancers	NHLF	lung
21	chr4:7631800-7632600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr4:7631800-7632800	Enhancers	HSMM	muscle
23	chr4:7631800-7633400	Enhancers	HUVEC	blood vessel
24	chr4:7631800-7633600	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr4:7631800-7633600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:7631800-7633800	Enhancers	HMEC	breast
27	chr4:7631800-7634000	Enhancers	Brain Angular Gyrus	brain
28	chr4:7631800-7634600	Enhancers	Brain Cingulate Gyrus	brain
29	chr4:7631800-7634600	Enhancers	Brain Substantia Nigra	brain
30	chr4:7631800-7634600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr4:7631800-7634600	Enhancers	Left Ventricle	heart
32	chr4:7631800-7634800	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr4:7631800-7635200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:7632000-7632200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr4:7632000-7632200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
36	chr4:7632000-7632400	Enhancers	NHEK	skin
37	chr4:7632000-7632400	Enhancers	Osteobl	bone
38	chr4:7632000-7632800	Active TSS	Colon Smooth Muscle	Colon
39	chr4:7632000-7633200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:7632000-7633200	Enhancers	Rectal Smooth Muscle	rectum
41	chr4:7632000-7633600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:7632000-7633600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:7632000-7633600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:7632000-7634000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links