Variant report

Variant	rs34376580
Chromosome Location	chr6:33576872-33576873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33576666..33582891-chr6:33586745..33591603,10	MCF-7	breast:
2	chr6:33576269..33579262-chr6:33600060..33601906,2	MCF-7	breast:
3	chr6:33555689..33557372-chr6:33575674..33577429,2	MCF-7	breast:
4	chr6:33574216..33577618-chr6:33579266..33582393,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000096433	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10947415	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10947418	0.90[EUR][1000 genomes]
rs11755257	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11757612	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758330	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12200154	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12206173	0.88[EUR][1000 genomes]
rs13195024	0.81[AMR][1000 genomes]
rs13195171	0.85[AMR][1000 genomes]
rs13219209	0.90[AMR][1000 genomes]
rs35329444	0.81[EUR][1000 genomes]
rs71565393	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
5	nsv5250	chr6:33565017-33598370	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33571600-33579000	Enhancers	Placenta	Placenta
2	chr6:33573400-33577200	Weak transcription	Fetal Intestine Large	intestine
3	chr6:33573400-33577600	Weak transcription	Colonic Mucosa	Colon
4	chr6:33574200-33577000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:33574400-33578600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:33574400-33579000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:33574400-33579400	Enhancers	Spleen	Spleen
8	chr6:33574400-33579600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:33574400-33579600	Enhancers	Stomach Mucosa	stomach
10	chr6:33574400-33583200	Enhancers	HMEC	breast
11	chr6:33574600-33580000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:33574600-33582400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:33574800-33579600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:33575000-33577000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:33575000-33579600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:33575000-33580200	Enhancers	A549	lung
17	chr6:33575200-33577400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:33575200-33577600	Weak transcription	Fetal Intestine Small	intestine
19	chr6:33575400-33577000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:33575400-33579000	Enhancers	NHDF-Ad	bronchial
21	chr6:33575400-33579200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:33575600-33577400	Weak transcription	NHEK	skin
23	chr6:33575600-33578000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:33575600-33578000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:33575600-33578600	Weak transcription	Esophagus	oesophagus
26	chr6:33575600-33579200	Enhancers	Fetal Lung	lung
27	chr6:33575800-33577000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr6:33575800-33577600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:33575800-33578000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:33575800-33579000	Enhancers	Right Ventricle	heart
31	chr6:33575800-33579200	Enhancers	HSMM	muscle
32	chr6:33575800-33579400	Enhancers	Right Atrium	heart
33	chr6:33576000-33577400	Bivalent Enhancer	HepG2	liver
34	chr6:33576000-33577800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:33576000-33579000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:33576200-33577000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:33576200-33577400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:33576200-33577600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:33576200-33577600	Enhancers	HSMMtube	muscle
40	chr6:33576200-33577800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:33576200-33578000	Weak transcription	Gastric	stomach
42	chr6:33576200-33578800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr6:33576200-33579600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:33576400-33577400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr6:33576400-33578000	Enhancers	K562	blood
46	chr6:33576400-33578600	Enhancers	Muscle Satellite Cultured Cells	--
47	chr6:33576400-33578800	Enhancers	NHLF	lung
48	chr6:33576400-33579000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
49	chr6:33576400-33579600	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr6:33576400-33579600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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