Variant report

Variant	rs34377006
Chromosome Location	chr2:190996613-190996614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11693404	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12990297	0.80[EUR][1000 genomes]
rs13012077	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1806354	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71434684	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7561288	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190985000-190997200	Weak transcription	Left Ventricle	heart
2	chr2:190991800-191004800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:190993200-191004800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr2:190996600-191008200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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