Variant report

Variant	rs34378441
Chromosome Location	chr3:42737037-42737038
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11079	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12487055	0.86[ASN][1000 genomes]
rs13072026	0.86[ASN][1000 genomes]
rs2240860	0.87[ASN][1000 genomes]
rs2290973	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs339693	0.96[EUR][1000 genomes]
rs339694	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs339695	0.97[EUR][1000 genomes]
rs339696	0.97[EUR][1000 genomes]
rs339697	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35659560	0.86[ASN][1000 genomes]
rs3846062	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3916333	0.86[ASN][1000 genomes]
rs61163642	0.88[ASN][1000 genomes]
rs6779396	0.86[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42728000-42742800	Weak transcription	Gastric	stomach
2	chr3:42729800-42737800	Weak transcription	Left Ventricle	heart
3	chr3:42733600-42740800	Weak transcription	Brain Angular Gyrus	brain
4	chr3:42734200-42737600	Weak transcription	Brain Anterior Caudate	brain
5	chr3:42734200-42738800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:42734400-42738200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:42734800-42740800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:42735600-42737600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:42736600-42737600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr3:42736600-42738200	Strong transcription	Brain Hippocampus Middle	brain
11	chr3:42736800-42738600	Enhancers	Fetal Heart	heart
12	chr3:42736800-42738800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:42737000-42737800	Enhancers	Right Atrium	heart
14	chr3:42737000-42740800	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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