Variant report

Variant	rs34386688
Chromosome Location	chr5:92498689-92498690
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92492798..92494347-chr5:92496334..92499006,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv980697	chr5:92498149-92499469	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92496400-92500800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:92496400-92500800	Enhancers	HMEC	breast
3	chr5:92496600-92499400	Enhancers	Fetal Lung	lung
4	chr5:92496600-92500600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr5:92496600-92500800	Enhancers	NHLF	lung
6	chr5:92497000-92499400	Enhancers	Adipose Nuclei	Adipose
7	chr5:92497200-92499000	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:92497200-92499200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:92497200-92499400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:92497400-92499400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:92497600-92498800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:92497600-92499400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:92497600-92499400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:92497600-92499400	Enhancers	Fetal Kidney	kidney
15	chr5:92497600-92499600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:92497800-92498800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:92497800-92499000	Flanking Active TSS	NH-A	brain
18	chr5:92497800-92499200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:92497800-92499400	Enhancers	Hela-S3	cervix
20	chr5:92498000-92499000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr5:92498000-92499000	Enhancers	Brain Cingulate Gyrus	brain
22	chr5:92498000-92499000	Enhancers	Stomach Smooth Muscle	stomach
23	chr5:92498000-92499400	Flanking Active TSS	HUVEC	blood vessel
24	chr5:92498200-92499000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr5:92498200-92499000	Enhancers	Fetal Brain Female	brain
26	chr5:92498200-92499000	Flanking Active TSS	NHEK	skin
27	chr5:92498400-92498800	Enhancers	A549	lung
28	chr5:92498400-92499400	Enhancers	HSMMtube	muscle
29	chr5:92498400-92500400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:92498400-92500400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr5:92498600-92498800	Enhancers	Fetal Brain Male	brain
32	chr5:92498600-92499400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr5:92498600-92499400	Enhancers	HSMM	muscle
34	chr5:92498600-92499600	Enhancers	Osteobl	bone
35	chr5:92498600-92500400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr5:92498600-92500400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:92498600-92500600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr5:92498600-92500600	Enhancers	NHDF-Ad	bronchial
39	chr5:92498600-92501400	Enhancers	Muscle Satellite Cultured Cells	--

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