Variant report

Variant	rs34390209
Chromosome Location	chr4:79895692-79895693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11721889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11722107	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11723402	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11726962	0.91[EUR][1000 genomes]
rs11733118	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11734417	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11735466	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1480732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17003536	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17003542	0.96[EUR][1000 genomes]
rs17003548	0.96[EUR][1000 genomes]
rs17003571	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56805198	0.89[EUR][1000 genomes]
rs72864015	0.96[EUR][1000 genomes]
rs72864075	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79892800-79895800	Active TSS	Brain Substantia Nigra	brain
2	chr4:79892800-79896200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:79894400-79896800	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:79894800-79895800	Flanking Active TSS	Aorta	Aorta
5	chr4:79895400-79896000	Enhancers	HSMMtube	muscle
6	chr4:79895600-79895800	Active TSS	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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