Variant report

Variant	rs34391588
Chromosome Location	chr6:28412346-28412347
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:28411913-28412722	K562	blood:	n/a	n/a

Variant related genes	Relation type
ZSCAN23	TF binding region
COX11P1	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419537	chr6:28412323-28414271	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28410400-28412400	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr6:28411600-28412400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
3	chr6:28411600-28412400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:28411600-28412400	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr6:28411600-28412400	Enhancers	Fetal Thymus	thymus
6	chr6:28411600-28412600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr6:28411600-28414400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:28411600-28414400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:28411600-28414400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:28411600-28414600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:28411600-28414600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:28411600-28414600	Weak transcription	NHLF	lung
13	chr6:28411600-28414800	Weak transcription	Aorta	Aorta
14	chr6:28411600-28414800	Weak transcription	Pancreas	Pancrea
15	chr6:28411800-28412400	Active TSS	Primary T cells from cord blood	blood
16	chr6:28411800-28412400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr6:28411800-28412800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:28411800-28414000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:28411800-28414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:28411800-28414400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:28411800-28414400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:28411800-28414400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:28411800-28414400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:28411800-28414400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:28411800-28414400	Weak transcription	NH-A	brain
26	chr6:28411800-28414400	Weak transcription	Osteobl	bone
27	chr6:28411800-28414600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:28411800-28414600	Weak transcription	Right Ventricle	heart
29	chr6:28411800-28414600	Weak transcription	HSMM	muscle
30	chr6:28411800-28414600	Weak transcription	HSMMtube	muscle
31	chr6:28412000-28414400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr6:28412000-28414400	Weak transcription	HMEC	breast
33	chr6:28412000-28414600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:28412000-28414600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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