Variant report

Variant	rs34393149
Chromosome Location	chr8:8621676-8621677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:8617914..8619415-chr8:8620497..8623459,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10104390	0.89[EUR][1000 genomes]
rs11996720	0.86[AMR][1000 genomes]
rs13275243	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13279453	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13281511	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17629123	0.83[EUR][1000 genomes]
rs17684514	0.82[AMR][1000 genomes]
rs3087732	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34812926	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34861302	0.88[AMR][1000 genomes]
rs34927688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35455911	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35503398	0.83[AMR][1000 genomes]
rs35834644	0.83[EUR][1000 genomes]
rs4841018	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4841019	0.83[EUR][1000 genomes]
rs4841028	0.90[AFR][1000 genomes]
rs7011770	0.84[AMR][1000 genomes]
rs71514510	0.84[AMR][1000 genomes]
rs7816942	0.83[EUR][1000 genomes]
rs7817377	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7817987	0.83[EUR][1000 genomes]
rs7838550	0.83[EUR][1000 genomes]
rs7842836	0.83[EUR][1000 genomes]
rs7845257	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1030433	chr8:8130629-8653691	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv539447	chr8:8130629-8653691	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1033463	chr8:8221922-8674333	Weak transcription Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv539451	chr8:8221922-8674333	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv1019613	chr8:8239352-8636357	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv539452	chr8:8239352-8636357	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv1019606	chr8:8353661-8736992	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv539456	chr8:8353661-8736992	Strong transcription Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	nsv1016933	chr8:8432279-8624770	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv1022511	chr8:8493992-8737132	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv539457	chr8:8493992-8737132	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	esv2762724	chr8:8578794-8630642	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv1795023	chr8:8583943-8655580	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
16	esv1825234	chr8:8583943-8655580	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
17	esv1824870	chr8:8583943-8699382	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
18	nsv610189	chr8:8590437-8664940	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
19	nsv831228	chr8:8608387-8790790	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
20	nsv1018828	chr8:8609880-8790660	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
21	nsv1022331	chr8:8610035-8787981	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
22	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8621000-8622400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:8621000-8623800	Enhancers	NHLF	lung
3	chr8:8621200-8621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:8621200-8621800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr8:8621200-8621800	Enhancers	Ovary	ovary
6	chr8:8621200-8621800	Enhancers	Stomach Smooth Muscle	stomach
7	chr8:8621200-8621800	Enhancers	HMEC	breast
8	chr8:8621200-8621800	Enhancers	NHDF-Ad	bronchial
9	chr8:8621200-8622000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:8621200-8622000	Enhancers	Fetal Heart	heart
11	chr8:8621200-8622000	Enhancers	Fetal Intestine Large	intestine
12	chr8:8621200-8622200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:8621200-8622200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:8621200-8622200	Enhancers	Brain Cingulate Gyrus	brain
15	chr8:8621200-8622200	Enhancers	Brain Hippocampus Middle	brain
16	chr8:8621200-8622200	Flanking Active TSS	Fetal Lung	lung
17	chr8:8621200-8622400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr8:8621200-8622400	Enhancers	Liver	Liver
19	chr8:8621200-8622400	Active TSS	Fetal Brain Male	brain
20	chr8:8621200-8622400	Enhancers	Fetal Muscle Leg	muscle
21	chr8:8621200-8622400	Enhancers	Fetal Stomach	stomach
22	chr8:8621200-8622600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:8621200-8622600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:8621200-8622600	Enhancers	Colon Smooth Muscle	Colon
25	chr8:8621200-8622800	Enhancers	Fetal Intestine Small	intestine
26	chr8:8621200-8622800	Enhancers	Rectal Smooth Muscle	rectum
27	chr8:8621200-8623200	Enhancers	Osteobl	bone
28	chr8:8621200-8623800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:8621400-8621800	Flanking Active TSS	NH-A	brain
30	chr8:8621400-8622000	Enhancers	Brain Anterior Caudate	brain
31	chr8:8621400-8622000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr8:8621400-8622000	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr8:8621400-8622200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:8621400-8622200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:8621400-8622400	Enhancers	HSMMtube	muscle
36	chr8:8621400-8622600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr8:8621400-8622600	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr8:8621400-8622600	Enhancers	Fetal Kidney	kidney
39	chr8:8621400-8623000	Enhancers	Stomach Mucosa	stomach
40	chr8:8621400-8646200	Weak transcription	Right Atrium	heart

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