Variant report

Variant	rs34398053
Chromosome Location	chr5:124569995-124569996
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124546600-124585200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124561400-124572600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:124567800-124570000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:124568000-124570000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:124568200-124570200	Enhancers	Stomach Mucosa	stomach
6	chr5:124568600-124573400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:124568800-124571000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:124568800-124571600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:124568800-124571600	Weak transcription	Brain Anterior Caudate	brain
10	chr5:124569200-124570200	Enhancers	Fetal Heart	heart
11	chr5:124569400-124570000	Enhancers	Colon Smooth Muscle	Colon
12	chr5:124569400-124570000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr5:124569600-124570000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr5:124569600-124570000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:124569600-124570000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:124569600-124570200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:124569600-124570800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:124569600-124572400	Weak transcription	Brain Substantia Nigra	brain
19	chr5:124569800-124570000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:124569800-124571600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr5:124569800-124571800	Weak transcription	Left Ventricle	heart
22	chr5:124569800-124572600	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links