Variant report

Variant	rs34402702
Chromosome Location	chr6:133063195-133063196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11154692	1.00[EUR][1000 genomes]
rs12200622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12210616	1.00[EUR][1000 genomes]
rs17061686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45455391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45471691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45521037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv965662	chr6:133058111-133063853	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv517934	chr6:133062916-133072650	Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133044400-133066200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:133055200-133064800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:133056800-133067400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:133057600-133069200	Weak transcription	GM12878-XiMat	blood
5	chr6:133058400-133064800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:133058400-133070400	Weak transcription	Liver	Liver
7	chr6:133058800-133067600	Weak transcription	Placenta	Placenta
8	chr6:133061400-133098000	Weak transcription	Spleen	Spleen
9	chr6:133061600-133072200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:133062000-133063200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
11	chr6:133062600-133063200	Genic enhancers	Primary B cells from cord blood	blood
12	chr6:133062600-133070400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:133062800-133063200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:133062800-133065600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:133063000-133063200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr6:133063000-133063600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:133063000-133063600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:133063000-133064600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:133063000-133065000	Enhancers	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links