Variant report

Variant	rs34406022
Chromosome Location	chr11:72871645-72871646
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72869535..72871803-chr11:72886638..72888327,2	MCF-7	breast:
2	chr11:72856496..72858577-chr11:72868139..72871657,5	K562	blood:
3	chr11:72852912..72855795-chr11:72870199..72872321,2	MCF-7	breast:
4	chr11:72870371..72871885-chr11:72874212..72876545,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256568	Chromatin interaction
ENSG00000137478	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12416806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12416851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12417247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12418733	0.83[ASN][1000 genomes]
rs12420406	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12421033	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17131839	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4578418	0.83[ASN][1000 genomes]
rs57027900	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59340990	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv386	chr11:72849097-72893807	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72854800-72872200	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:72862800-72872000	Enhancers	Fetal Intestine Large	intestine
3	chr11:72863000-72871800	Enhancers	Fetal Intestine Small	intestine
4	chr11:72863800-72871800	Enhancers	Placenta	Placenta
5	chr11:72867000-72871800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:72867200-72871800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr11:72867400-72871800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:72867400-72871800	Enhancers	Left Ventricle	heart
9	chr11:72868600-72871800	Enhancers	Fetal Heart	heart
10	chr11:72869000-72871800	Enhancers	Osteobl	bone
11	chr11:72869200-72871800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:72869400-72873200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:72869800-72871800	Enhancers	Primary B cells from cord blood	blood
14	chr11:72869800-72873200	Weak transcription	Thymus	Thymus
15	chr11:72869800-72874600	Weak transcription	Aorta	Aorta
16	chr11:72869800-72874600	Weak transcription	Ovary	ovary
17	chr11:72870200-72873200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:72870200-72873400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:72870200-72875000	Weak transcription	Adipose Nuclei	Adipose
20	chr11:72870200-72875200	Weak transcription	Liver	Liver
21	chr11:72870400-72878200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:72870600-72873400	Weak transcription	Lung	lung
23	chr11:72870800-72871800	Enhancers	K562	blood
24	chr11:72870800-72873000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr11:72870800-72880200	Enhancers	HepG2	liver
26	chr11:72871000-72871800	Genic enhancers	GM12878-XiMat	blood
27	chr11:72871000-72873600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:72871000-72876000	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:72871200-72873000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:72871200-72874800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:72871200-72879800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:72871400-72873200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:72871400-72873600	Weak transcription	Spleen	Spleen
34	chr11:72871400-72874600	Weak transcription	HSMMtube	muscle
35	chr11:72871400-72874800	Weak transcription	Right Atrium	heart
36	chr11:72871600-72873200	Weak transcription	Right Ventricle	heart
37	chr11:72871600-72880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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