Variant report

Variant	rs34407750
Chromosome Location	chr11:76169154-76169155
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76152066..76158313-chr11:76167740..76173788,10	K562	blood:
2	chr11:76165538..76167184-chr11:76168233..76170984,2	K562	blood:
3	chr11:76168379..76170394-chr11:76173711..76176105,2	K562	blood:

Variant related genes	Relation type
ENSG00000158636	Chromatin interaction
ENSG00000255135	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11600501	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11601556	1.00[EUR][1000 genomes]
rs11602123	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11603022	1.00[EUR][1000 genomes]
rs11607503	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11607874	0.93[EUR][1000 genomes]
rs73493482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76157200-76183400	Weak transcription	Gastric	stomach
2	chr11:76157200-76183600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:76157200-76183600	Weak transcription	Spleen	Spleen
4	chr11:76157200-76183800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:76157200-76190200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:76157200-76191200	Weak transcription	Stomach Mucosa	stomach
7	chr11:76157400-76169800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:76157400-76171000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:76157400-76174800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:76157400-76179800	Weak transcription	HSMMtube	muscle
11	chr11:76157400-76183400	Weak transcription	Right Ventricle	heart
12	chr11:76157400-76183600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:76157400-76183600	Weak transcription	Esophagus	oesophagus
14	chr11:76157400-76190200	Weak transcription	Colonic Mucosa	Colon
15	chr11:76157600-76173600	Weak transcription	Brain Substantia Nigra	brain
16	chr11:76157800-76169200	Weak transcription	Brain Anterior Caudate	brain
17	chr11:76157800-76174800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:76158000-76170000	Weak transcription	Fetal Heart	heart
19	chr11:76158000-76171400	Strong transcription	Liver	Liver
20	chr11:76158000-76171400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr11:76158000-76171800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr11:76158000-76171800	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr11:76158000-76172000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:76158000-76172000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:76158000-76174800	Weak transcription	HMEC	breast
26	chr11:76158000-76177400	Strong transcription	Fetal Thymus	thymus
27	chr11:76158000-76181000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr11:76158200-76169200	Weak transcription	HepG2	liver
29	chr11:76158200-76179400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:76158200-76190200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:76158400-76171800	Strong transcription	Primary B cells from peripheral blood	blood
32	chr11:76158400-76172200	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:76158600-76172200	Strong transcription	Dnd41	blood
34	chr11:76158600-76172800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:76158800-76169800	Weak transcription	GM12878-XiMat	blood
36	chr11:76158800-76171000	Weak transcription	NHEK	skin
37	chr11:76159000-76172800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:76159800-76190400	Weak transcription	Colon Smooth Muscle	Colon
39	chr11:76160000-76178800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:76160400-76170400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:76162200-76171800	Weak transcription	Fetal Intestine Small	intestine
42	chr11:76162200-76173600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:76162200-76183600	Weak transcription	Lung	lung
44	chr11:76162400-76169200	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:76162400-76170000	Weak transcription	K562	blood
46	chr11:76162600-76171000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:76162800-76169400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:76163200-76169200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:76163600-76170200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr11:76164000-76174800	Weak transcription	Brain Germinal Matrix	brain

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