Variant report

Variant	rs34411893
Chromosome Location	chr5:116694743-116694744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10036986	0.89[ASN][1000 genomes]
rs10039799	0.89[ASN][1000 genomes]
rs10039823	0.89[ASN][1000 genomes]
rs10061651	0.85[ASN][1000 genomes]
rs10069843	0.89[ASN][1000 genomes]
rs11749394	0.89[ASN][1000 genomes]
rs13159487	0.89[ASN][1000 genomes]
rs13164446	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13172380	0.97[ASN][1000 genomes]
rs13187413	0.89[ASN][1000 genomes]
rs34173130	0.89[ASN][1000 genomes]
rs34205076	0.89[ASN][1000 genomes]
rs34227028	0.89[ASN][1000 genomes]
rs34729533	0.86[ASN][1000 genomes]
rs34937570	0.89[ASN][1000 genomes]
rs4259204	0.89[ASN][1000 genomes]
rs4443456	0.89[ASN][1000 genomes]
rs4448037	0.89[ASN][1000 genomes]
rs4457117	0.89[ASN][1000 genomes]
rs4458619	0.89[ASN][1000 genomes]
rs4460168	0.88[ASN][1000 genomes]
rs4464733	0.89[ASN][1000 genomes]
rs4464734	0.89[ASN][1000 genomes]
rs4469226	0.89[ASN][1000 genomes]
rs4481380	0.87[ASN][1000 genomes]
rs4498285	0.92[ASN][1000 genomes]
rs4547957	0.87[ASN][1000 genomes]
rs4552663	0.89[ASN][1000 genomes]
rs4563664	0.88[ASN][1000 genomes]
rs4566827	0.88[ASN][1000 genomes]
rs4568397	0.89[ASN][1000 genomes]
rs4593300	0.89[ASN][1000 genomes]
rs4623185	0.88[ASN][1000 genomes]
rs4629633	0.89[ASN][1000 genomes]
rs5011797	0.89[ASN][1000 genomes]
rs61332533	0.89[ASN][1000 genomes]
rs62380367	0.89[ASN][1000 genomes]
rs6595039	0.88[ASN][1000 genomes]
rs6595040	0.88[ASN][1000 genomes]
rs6595041	0.95[ASN][1000 genomes]
rs6860005	0.89[ASN][1000 genomes]
rs6869527	0.89[ASN][1000 genomes]
rs6870045	0.92[ASN][1000 genomes]
rs6870063	0.92[ASN][1000 genomes]
rs6879112	0.89[ASN][1000 genomes]
rs6888983	0.92[ASN][1000 genomes]
rs71593206	0.89[ASN][1000 genomes]
rs7447809	0.89[ASN][1000 genomes]
rs7708255	0.85[ASN][1000 genomes]
rs7712311	0.89[ASN][1000 genomes]
rs7712524	0.89[ASN][1000 genomes]
rs7715988	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7716581	0.97[ASN][1000 genomes]
rs7733520	0.89[AMR][1000 genomes]
rs7733545	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv7238	chr5:116694326-116695085	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
3	esv3469781	chr5:116694376-116694946	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
4	esv3324676	chr5:116694429-116694967	Weak transcription	n/a	n/a	inside rSNPs	n/a
5	esv3528797	chr5:116694431-116694907	Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3469780	chr5:116694433-116694913	Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3469782	chr5:116694450-116694860	Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv3427677	chr5:116694460-116694906	Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv3469783	chr5:116694493-116694840	Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3528795	chr5:116694505-116694845	Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv3469784	chr5:116694509-116694843	Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv3528798	chr5:116694509-116694843	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116687200-116697200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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