Variant report

Variant	rs34412908
Chromosome Location	chr2:173273745-173273746
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173272055..173273820-chr2:173294658..173297401,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12992315	0.93[EUR][1000 genomes]
rs12996569	0.85[EUR][1000 genomes]
rs13005010	0.85[EUR][1000 genomes]
rs13011908	0.81[EUR][1000 genomes]
rs16860332	0.82[EUR][1000 genomes]
rs2884228	0.85[EUR][1000 genomes]
rs34264824	0.95[EUR][1000 genomes]
rs34653380	0.95[EUR][1000 genomes]
rs36091681	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv875414	chr2:173267081-173307756	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173267600-173275600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:173267800-173274600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:173270000-173273800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:173270000-173277600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:173270400-173277600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:173271000-173275800	Enhancers	HMEC	breast
7	chr2:173271400-173274600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:173272800-173274400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr2:173272800-173276400	Enhancers	HUVEC	blood vessel
10	chr2:173273000-173273800	Flanking Active TSS	NHEK	skin
11	chr2:173273000-173274600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr2:173273000-173274600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr2:173273000-173274800	Enhancers	Stomach Mucosa	stomach
14	chr2:173273200-173273800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:173273200-173273800	Weak transcription	Fetal Kidney	kidney
16	chr2:173273200-173274600	Enhancers	Duodenum Mucosa	Duodenum
17	chr2:173273400-173274200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr2:173273400-173277600	Weak transcription	Adipose Nuclei	Adipose
19	chr2:173273400-173278000	Weak transcription	Left Ventricle	heart
20	chr2:173273400-173280600	Weak transcription	Fetal Intestine Small	intestine
21	chr2:173273600-173274000	Weak transcription	Pancreas	Pancrea
22	chr2:173273600-173274200	Weak transcription	Fetal Thymus	thymus
23	chr2:173273600-173277400	Weak transcription	Thymus	Thymus

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