Variant report

Variant	rs34418327
Chromosome Location	chr12:10313615-10313616
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12306665	1.00[AMR][1000 genomes]
rs12322198	1.00[AMR][1000 genomes]
rs16916469	0.89[EUR][1000 genomes]
rs34837900	1.00[EUR][1000 genomes]
rs35555206	1.00[EUR][1000 genomes]
rs35567600	1.00[EUR][1000 genomes]
rs35827587	1.00[EUR][1000 genomes]
rs74060602	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv898758	chr12:10309477-10318497	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10307000-10318600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr12:10307000-10319800	Weak transcription	Right Atrium	heart
3	chr12:10311200-10315000	Enhancers	Primary B cells from cord blood	blood
4	chr12:10311600-10316200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr12:10312800-10313800	Enhancers	Fetal Stomach	stomach
6	chr12:10312800-10314400	Enhancers	Primary B cells from peripheral blood	blood
7	chr12:10313200-10313800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr12:10313200-10313800	Enhancers	NHEK	skin
9	chr12:10313200-10317600	Weak transcription	Placenta	Placenta
10	chr12:10313400-10313800	Flanking Active TSS	GM12878-XiMat	blood
11	chr12:10313600-10315800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr12:10313600-10318000	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links