Variant report

Variant	rs34418408
Chromosome Location	chr5:145069807-145069808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34024754	0.83[AFR][1000 genomes]
rs34089287	0.97[AFR][1000 genomes]
rs34470165	0.90[AFR][1000 genomes]
rs34752631	0.95[AFR][1000 genomes]
rs35005310	0.80[AFR][1000 genomes]
rs35763042	1.00[AFR][1000 genomes]
rs7810599	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145074600	Weak transcription	Aorta	Aorta
2	chr5:145060800-145089600	Weak transcription	Gastric	stomach
3	chr5:145061400-145076800	Weak transcription	Pancreas	Pancrea
4	chr5:145062400-145071800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:145066600-145084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:145067600-145070600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:145068000-145070400	Enhancers	Brain Substantia Nigra	brain
8	chr5:145068400-145070000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr5:145068400-145070200	Enhancers	Brain Cingulate Gyrus	brain
10	chr5:145068600-145106200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:145069400-145070600	Enhancers	Brain Hippocampus Middle	brain
12	chr5:145069400-145076800	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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