Variant report

Variant	rs34421305
Chromosome Location	chr3:136418274-136418275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13067764	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13072698	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35290537	0.87[AMR][1000 genomes]
rs67113926	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73228016	1.00[AFR][1000 genomes]
rs73230093	0.87[AMR][1000 genomes]
rs7646245	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1008866	chr3:136364511-136427790	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136390800-136447800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:136409400-136422000	Weak transcription	Lung	lung
3	chr3:136411000-136444400	Weak transcription	Fetal Lung	lung
4	chr3:136411600-136419200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:136411600-136427800	Weak transcription	Right Ventricle	heart
6	chr3:136413200-136420200	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:136413200-136420800	Weak transcription	Right Atrium	heart
8	chr3:136413400-136423400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:136413400-136447200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:136413800-136447800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:136414800-136426400	Weak transcription	Fetal Kidney	kidney
12	chr3:136415000-136420800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:136415200-136422600	Weak transcription	Fetal Thymus	thymus
14	chr3:136415200-136426200	Weak transcription	HepG2	liver
15	chr3:136415200-136444600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:136415200-136446000	Weak transcription	Thymus	Thymus
17	chr3:136415400-136430200	Weak transcription	Psoas Muscle	Psoas
18	chr3:136415400-136431000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:136415400-136444400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:136415400-136444400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:136415400-136447200	Weak transcription	NHDF-Ad	bronchial
22	chr3:136415400-136447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:136415600-136422000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:136416200-136435600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr3:136416200-136444200	Weak transcription	Primary B cells from cord blood	blood
26	chr3:136416400-136426400	Weak transcription	Adipose Nuclei	Adipose
27	chr3:136416400-136431400	Weak transcription	Dnd41	blood
28	chr3:136416800-136444200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:136417000-136419000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr3:136417200-136418800	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr3:136417400-136418800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr3:136417400-136419000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr3:136417400-136419000	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr3:136417400-136419200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr3:136417600-136422200	Weak transcription	Brain Substantia Nigra	brain
36	chr3:136417800-136418400	Enhancers	Left Ventricle	heart
37	chr3:136417800-136418400	Enhancers	Ovary	ovary
38	chr3:136417800-136418600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:136417800-136418800	Enhancers	Aorta	Aorta
40	chr3:136418000-136418400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:136418000-136418400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr3:136418000-136435400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr3:136418000-136444400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr3:136418200-136418600	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr3:136418200-136418800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr3:136418200-136435400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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