Variant report

Variant	rs34423134
Chromosome Location	chr10:117896445-117896446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12762003	0.84[EUR][1000 genomes]
rs12775807	0.84[EUR][1000 genomes]
rs12776813	0.87[ASN][1000 genomes]
rs12778200	0.87[ASN][1000 genomes]
rs12778389	0.86[ASN][1000 genomes]
rs17094225	0.84[EUR][1000 genomes]
rs17094234	0.84[EUR][1000 genomes]
rs2420242	0.82[EUR][1000 genomes]
rs34104075	0.82[EUR][1000 genomes]
rs34755001	0.83[EUR][1000 genomes]
rs35175214	0.84[EUR][1000 genomes]
rs3781529	0.87[ASN][1000 genomes]
rs3781531	0.87[ASN][1000 genomes]
rs66765527	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117892400-117896600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:117892400-117898400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:117893000-117898400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:117893000-117903000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:117893400-117899000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:117894000-117907200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:117895200-117902200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:117896200-117897200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:117896400-117897200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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