Variant report

Variant	rs34426290
Chromosome Location	chrX:153832727-153832728
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chrX:153832236-153832908	MCF10A-Er-Src	breast:	n/a	chrX:153832451-153832462
2	STAT3	chrX:153832263-153832800	Hela-S3	cervix:	n/a	chrX:153832718-153832725
3	SP1	chrX:153832152-153832803	HCT-116	colon:	n/a	n/a
4	RFX5	chrX:153832273-153832737	Hela-S3	cervix:	n/a	n/a
5	SMC3	chrX:153832227-153832785	Hela-S3	cervix:	n/a	n/a
6	TCF12	chrX:153832055-153832775	SK-N-SH	brain:	n/a	n/a
7	EP300	chrX:153832133-153832733	SK-N-SH	brain:	n/a	n/a
8	FOS	chrX:153832265-153832780	MCF10A-Er-Src	breast:	n/a	chrX:153832451-153832462
9	GATA3	chrX:153832153-153832774	SK-N-SH	brain:	n/a	n/a
10	FOS	chrX:153832214-153832758	MCF10A-Er-Src	breast:	n/a	chrX:153832451-153832462
11	STAT3	chrX:153832289-153832735	MCF10A-Er-Src	breast:	n/a	chrX:153832718-153832725
12	MYC	chrX:153832149-153832930	MCF10A-Er-Src	breast:	n/a	chrX:153832876-153832885 chrX:153832875-153832886
13	GATA3	chrX:153832072-153832741	SK-N-SH	brain:	n/a	chrX:153832090-153832103 chrX:153832092-153832100
14	E2F4	chrX:153832353-153832908	MCF10A-Er-Src	breast:	n/a	n/a
15	TEAD4	chrX:153832152-153832773	SK-N-SH	brain:	n/a	n/a
16	NFIC	chrX:153832149-153832805	SK-N-SH	brain:	n/a	n/a
17	FOSL2	chrX:153832270-153832766	MCF-7	breast:	n/a	n/a
18	RCOR1	chrX:153832231-153832748	Hela-S3	cervix:	n/a	n/a
19	JUND	chrX:153831909-153832843	SK-N-SH	brain:	n/a	chrX:153832451-153832462
20	FOSL2	chrX:153832226-153832793	SK-N-SH	brain:	n/a	n/a
21	TCF12	chrX:153832050-153832868	SK-N-SH	brain:	n/a	n/a
22	SP1	chrX:153832101-153832786	HCT-116	colon:	n/a	n/a
23	EP300	chrX:153832200-153832749	Hela-S3	cervix:	n/a	n/a
24	CEBPB	chrX:153832212-153832797	Hela-S3	cervix:	n/a	chrX:153832613-153832626
25	JUND	chrX:153832208-153832750	Hela-S3	cervix:	n/a	chrX:153832451-153832462
26	JUND	chrX:153832153-153832734	SK-N-SH	brain:	n/a	chrX:153832451-153832462
27	TCF12	chrX:153832186-153832771	ECC-1	luminal epithelium:	n/a	n/a
28	JUND	chrX:153832108-153832817	HCT-116	colon:	n/a	chrX:153832451-153832462
29	MAFK	chrX:153832282-153832750	Hela-S3	cervix:	n/a	n/a
30	FOS	chrX:153832237-153832917	MCF10A-Er-Src	breast:	n/a	chrX:153832451-153832462
31	RAD21	chrX:153832265-153832768	Hela-S3	cervix:	n/a	n/a
32	FOSL1	chrX:153832121-153832785	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:153774436..153776953-chrX:153831289..153833251,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232155	TF binding region
ENSG00000073009	Chromatin interaction
ENSG00000160211	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532962	chrX:153564946-153870337	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
2	nsv532964	chrX:153622940-153854307	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
3	esv3648994	chrX:153829693-153919915	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv518228	chrX:153829693-153919915	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153828000-153833000	Enhancers	HSMMtube	muscle
2	chrX:153828400-153835000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chrX:153828600-153833400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chrX:153828800-153833200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chrX:153829400-153833000	Enhancers	HSMM	muscle
6	chrX:153829800-153836000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chrX:153830200-153833200	Enhancers	Hela-S3	cervix
8	chrX:153831000-153833000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chrX:153831000-153833200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chrX:153831200-153833200	Enhancers	HMEC	breast
11	chrX:153831600-153833000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chrX:153831600-153833000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chrX:153831600-153833000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chrX:153831600-153833000	Enhancers	NHEK	skin
15	chrX:153831800-153833000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chrX:153831800-153833000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chrX:153831800-153833000	Enhancers	Muscle Satellite Cultured Cells	--
18	chrX:153831800-153833000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chrX:153831800-153833000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chrX:153831800-153833000	Enhancers	A549	lung
21	chrX:153832000-153832800	Enhancers	HUVEC	blood vessel
22	chrX:153832000-153832800	Enhancers	Osteobl	bone
23	chrX:153832000-153833000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chrX:153832000-153833000	Enhancers	Placenta Amnion	Placenta Amnion
25	chrX:153832000-153833000	Enhancers	NH-A	brain
26	chrX:153832600-153833000	Enhancers	NHDF-Ad	bronchial
27	chrX:153832600-153834600	Weak transcription	Primary monocytes fromperipheralblood	blood

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