Variant report

Variant	rs344457
Chromosome Location	chr7:146375139-146375140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10249351	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs1072972	0.85[JPT][hapmap]
rs1072973	0.90[JPT][hapmap]
rs10952649	0.83[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap]
rs10952650	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10952651	0.89[CEU][hapmap]
rs10952658	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12530645	0.95[JPT][hapmap]
rs12669096	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1389783	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1494452	0.83[JPT][hapmap]
rs1494453	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1494458	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs1587048	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs1587049	0.85[JPT][hapmap]
rs168257	0.90[CEU][hapmap]
rs2109280	0.90[JPT][hapmap]
rs2131932	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2159461	0.87[CEU][hapmap]
rs2249085	0.90[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2372762	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2372763	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs2533082	0.84[JPT][hapmap]
rs2533084	0.85[JPT][hapmap]
rs2533088	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2533108	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2533109	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2533120	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2533122	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs2642483	0.85[JPT][hapmap]
rs2642484	0.85[JPT][hapmap]
rs2642485	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2642486	0.90[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2642487	0.90[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2642488	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs2642490	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2642495	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2642496	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs2642500	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2642505	0.89[CEU][hapmap]
rs2642515	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs2642516	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2888408	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2907673	0.85[JPT][hapmap]
rs6945453	0.85[JPT][hapmap]
rs6954014	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs6959595	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs6972322	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs717171	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs740808	0.90[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7797256	0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7802801	0.80[CEU][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889391	chr7:146168418-146389259	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1021967	chr7:146199590-146413808	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1015996	chr7:146202073-146419347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv934014	chr7:146212698-146400508	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1022547	chr7:146226298-146624409	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv996300	chr7:146236230-146663300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1025948	chr7:146252115-146393151	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1018605	chr7:146287876-146448400	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv889392	chr7:146292088-146446767	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1027561	chr7:146308783-146762872	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv608939	chr7:146332953-146464965	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1021923	chr7:146344105-146442062	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1021542	chr7:146344105-146564397	Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv817275	chr7:146346102-146475758	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv2761379	chr7:146347722-146448412	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv531439	chr7:146349600-146467532	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv889393	chr7:146353619-146428215	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv889394	chr7:146364177-146464965	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv608940	chr7:146367793-146660924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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