The 2.0 version of rSNPBase

Variant report

Variant rs34456069
Chromosome Location chr1:62356172-62356173
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62228600-62391800 Weak transcription Small Intestine intestine
2 chr1:62317800-62390400 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:62319000-62373800 Weak transcription Brain Angular Gyrus brain
4 chr1:62324400-62361000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:62325000-62357400 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr1:62330400-62361000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
7 chr1:62331600-62371800 Weak transcription H9 Cell Line embryonic stem cell
8 chr1:62331800-62384200 Weak transcription Gastric stomach
9 chr1:62336000-62408600 Weak transcription Pancreas Pancrea
10 chr1:62336200-62362400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:62336400-62360200 Weak transcription Primary B cells from peripheral blood blood
12 chr1:62336600-62380000 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr1:62336800-62356400 Weak transcription iPS-15b Cell Line embryonic stem cell
14 chr1:62339800-62356800 Weak transcription ES-I3 Cell Line embryonic stem cell
15 chr1:62339800-62361200 Weak transcription Lung lung
16 chr1:62340400-62399200 Weak transcription Primary hematopoietic stem cells blood
17 chr1:62341400-62361000 Weak transcription Brain Substantia Nigra brain
18 chr1:62342400-62358400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr1:62342600-62361000 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr1:62344000-62362200 Weak transcription Right Ventricle heart
21 chr1:62344400-62367000 Weak transcription Colonic Mucosa Colon
22 chr1:62346000-62389400 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr1:62346200-62417600 Weak transcription Rectal Smooth Muscle rectum
24 chr1:62346800-62358800 Weak transcription Brain Hippocampus Middle brain
25 chr1:62348200-62360600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:62348600-62361000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr1:62350200-62397600 Weak transcription Esophagus oesophagus
28 chr1:62350400-62361000 Weak transcription H1 Cell Line embryonic stem cell
29 chr1:62350600-62356400 Weak transcription Primary T helper naive cells fromperipheralblood blood
30 chr1:62350600-62360000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr1:62350600-62380200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
32 chr1:62350600-62391600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
33 chr1:62350600-62428200 Weak transcription Primary T helper naive cells from peripheral blood blood
34 chr1:62350800-62356800 Weak transcription HMEC breast
35 chr1:62350800-62361200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
36 chr1:62350800-62363200 Weak transcription Liver Liver
37 chr1:62350800-62374200 Weak transcription Primary T regulatory cells fromperipheralblood blood
38 chr1:62350800-62395800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
39 chr1:62350800-62397800 Weak transcription Primary T cells from cord blood blood
40 chr1:62350800-62417600 Weak transcription Ovary ovary
41 chr1:62351600-62359200 Strong transcription Primary T helper cells fromperipheralblood blood
42 chr1:62352200-62357800 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr1:62352200-62367000 Weak transcription HUES48 Cell Line embryonic stem cell
44 chr1:62352200-62375200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
45 chr1:62353400-62358400 Strong transcription Breast Myoepithelial Primary Cells Breast
46 chr1:62353400-62358800 Weak transcription Fetal Lung lung
47 chr1:62353400-62360000 Weak transcription HUES6 Cell Line embryonic stem cell
48 chr1:62353400-62360800 Weak transcription HUES64 Cell Line embryonic stem cell
49 chr1:62353400-62361000 Weak transcription iPS-20b Cell Line embryonic stem cell
50 chr1:62353400-62378400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015