Variant report

Variant	rs34459753
Chromosome Location	chr12:120830267-120830268
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120829018..120830567-chr12:120831516..120833255,2	K562	blood:
2	chr12:120728240..120730746-chr12:120827954..120830524,2	MCF-7	breast:
3	chr12:120828288..120830518-chr12:120831065..120833255,2	K562	blood:
4	chr12:120805193..120807077-chr12:120827628..120830332,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135097	Chromatin interaction
ENSG00000202538	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11065097	0.83[ASN][1000 genomes]
rs206967	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899555	chr12:120519124-120840522	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	499 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120827000-120832200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:120827200-120875200	Weak transcription	Right Atrium	heart
3	chr12:120827600-120831200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:120827600-120831400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:120827600-120831600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:120827600-120831600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr12:120827600-120832200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:120827600-120832200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr12:120827600-120832600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr12:120827600-120835400	Weak transcription	Fetal Brain Female	brain
11	chr12:120827800-120831200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr12:120827800-120831600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:120827800-120831600	Weak transcription	Brain Germinal Matrix	brain
14	chr12:120828400-120832200	Weak transcription	Fetal Brain Male	brain
15	chr12:120828600-120831600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:120828600-120832000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr12:120829000-120831000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr12:120829000-120831400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr12:120829200-120831200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr12:120829200-120831200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:120829200-120836200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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