Variant report

Variant	rs34462841
Chromosome Location	chr3:49807687-49807688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49791928..49793924-chr3:49807160..49809101,2	MCF-7	breast:
2	chr3:49806056..49808171-chr3:49842986..49844685,2	K562	blood:

Variant related genes	Relation type
ENSG00000263506	Chromatin interaction
ENSG00000182179	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12486358	1.00[MEX][hapmap]
rs13078735	1.00[MEX][hapmap]
rs34105549	1.00[MEX][hapmap]
rs34127462	1.00[MEX][hapmap]
rs34810691	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71326907	1.00[AMR][1000 genomes]
rs7433231	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49762600-49809000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:49775600-49817000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr3:49775800-49810200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr3:49775800-49823000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:49776400-49812000	Weak transcription	HSMM	muscle
6	chr3:49776400-49812200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:49776400-49812600	Weak transcription	Gastric	stomach
8	chr3:49776400-49818000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:49776400-49818000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:49776400-49818200	Weak transcription	Fetal Kidney	kidney
11	chr3:49776600-49812000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:49782600-49814000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:49785600-49822400	Weak transcription	HSMMtube	muscle
14	chr3:49785600-49822600	Weak transcription	Esophagus	oesophagus
15	chr3:49785800-49811200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:49785800-49812400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:49785800-49818000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:49786000-49812400	Weak transcription	NHEK	skin
19	chr3:49786000-49812600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:49786000-49812800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:49786000-49814400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:49786000-49823000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:49786200-49812000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:49786200-49812600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:49786200-49812600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:49786200-49822400	Weak transcription	HMEC	breast
27	chr3:49786400-49817800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:49786600-49812800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:49786600-49817800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:49787600-49808000	Weak transcription	Brain Germinal Matrix	brain
31	chr3:49787800-49812600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr3:49787800-49812600	Weak transcription	Thymus	Thymus
33	chr3:49788400-49808600	Weak transcription	GM12878-XiMat	blood
34	chr3:49791400-49812000	Weak transcription	Colon Smooth Muscle	Colon
35	chr3:49791800-49812400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:49792000-49807800	Weak transcription	Lung	lung
37	chr3:49792400-49812600	Weak transcription	Pancreas	Pancrea
38	chr3:49793800-49817600	Weak transcription	Spleen	Spleen
39	chr3:49795000-49818000	Weak transcription	Psoas Muscle	Psoas
40	chr3:49795000-49819000	Weak transcription	Right Ventricle	heart
41	chr3:49795000-49821000	Weak transcription	K562	blood
42	chr3:49795400-49822400	Weak transcription	Stomach Mucosa	stomach
43	chr3:49797200-49812600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr3:49797400-49812000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr3:49802400-49818000	Weak transcription	Right Atrium	heart
46	chr3:49802600-49809000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr3:49802600-49810200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr3:49804000-49812800	Weak transcription	Liver	Liver
49	chr3:49804000-49822600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr3:49804200-49816000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links