Variant report

Variant	rs34464355
Chromosome Location	chr2:116196512-116196513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:35)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:35 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr2:116196296-116196887	HepG2	liver:	n/a	n/a
2	HEY1	chr2:116196304-116196623	K562	blood:	n/a	n/a
3	IRF4	chr2:116196213-116196806	GM12878	blood:	n/a	n/a
4	PAX5	chr2:116196225-116196842	GM12878	blood:	n/a	n/a
5	ZBTB33	chr2:116196451-116196924	HepG2	liver:	n/a	n/a
6	BCL11A	chr2:116196322-116196853	GM12878	blood:	n/a	n/a
7	POLR2A	chr2:116196295-116196799	GM12878	blood:	n/a	n/a
8	REST	chr2:116196326-116196752	HepG2	liver:	n/a	n/a
9	PAX5	chr2:116196135-116196961	GM12878	blood:	n/a	n/a
10	IRF4	chr2:116196179-116197041	GM12878	blood:	n/a	n/a
11	SP1	chr2:116196453-116196940	HepG2	liver:	n/a	n/a
12	POU2F2	chr2:116196269-116196946	GM12878	blood:	n/a	n/a
13	JUND	chr2:116196289-116196805	HepG2	liver:	n/a	n/a
14	RXRA	chr2:116196379-116196722	HepG2	liver:	n/a	n/a
15	SIX5	chr2:116196292-116196692	K562	blood:	n/a	n/a
16	FOSL2	chr2:116196280-116196854	HepG2	liver:	n/a	n/a
17	BCL11A	chr2:116196313-116196863	GM12878	blood:	n/a	n/a
18	USF1	chr2:116196319-116196725	HepG2	liver:	n/a	n/a
19	POU2F2	chr2:116196176-116196936	GM12891	blood:	n/a	n/a
20	SP1	chr2:116196508-116196844	GM12878	blood:	n/a	n/a
21	SIN3AK20	chr2:116196459-116196759	HepG2	liver:	n/a	n/a
22	TAF1	chr2:116196308-116196904	HepG2	liver:	n/a	n/a
23	SPI1	chr2:116196297-116196891	GM12878	blood:	n/a	n/a
24	EP300	chr2:116196320-116196898	GM12878	blood:	n/a	n/a
25	NR3C1	chr2:116196279-116196850	A549	lung:	n/a	n/a
26	SIX5	chr2:116196273-116196782	GM12878	blood:	n/a	n/a
27	BATF	chr2:116196453-116196805	GM12878	blood:	n/a	n/a
28	SIN3AK20	chr2:116196360-116196774	HepG2	liver:	n/a	n/a
29	FOSL2	chr2:116196257-116196821	HepG2	liver:	n/a	n/a
30	EBF1	chr2:116196300-116196816	GM12878	blood:	n/a	n/a
31	TCF12	chr2:116196472-116196746	GM12878	blood:	n/a	n/a
32	ZBTB33	chr2:116196215-116196846	GM12878	blood:	n/a	n/a
33	USF1	chr2:116196454-116196950	A549	lung:	n/a	n/a
34	ZBTB33	chr2:116196375-116196963	GM12878	blood:	n/a	n/a
35	SP1	chr2:116196231-116196856	GM12878	blood:	n/a	n/a

No data

Variant related genes	Relation type
DPP10	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874919	chr2:116130709-116219686	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3358207	chr2:116194582-116198780	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
3	esv2494215	chr2:116196176-116197917	Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
4	esv21323	chr2:116196284-116197112	Weak transcription ZNF genes & repeats Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116189400-116198800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:116194400-116198800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:116195400-116196600	Weak transcription	Pancreas	Pancrea
4	chr2:116196400-116196600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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