Variant report

Variant	rs34471356
Chromosome Location	chr15:83781014-83781015
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83777740..83781567-chr15:83783263..83786281,3	MCF-7	breast:
2	chr15:83775374..83777785-chr15:83779584..83782378,2	MCF-7	breast:
3	chr15:83768366..83770351-chr15:83779255..83781132,2	K562	blood:
4	chr15:83731812..83734557-chr15:83779300..83781603,2	K562	blood:
5	chr15:83777307..83779024-chr15:83779702..83782289,2	K562	blood:
6	chr15:83731075..83738271-chr15:83771545..83781798,12	K562	blood:
7	chr15:83778623..83781494-chr15:83786049..83787627,2	K562	blood:
8	chr15:83734114..83735932-chr15:83779547..83781078,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000263643	Chromatin interaction
ENSG00000260579	Chromatin interaction
ENSG00000136404	Chromatin interaction
ENSG00000064726	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17158063	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17158080	0.83[AFR][1000 genomes]
rs28436027	0.83[AFR][1000 genomes]
rs28754750	0.83[AFR][1000 genomes]
rs56391827	0.84[AFR][1000 genomes]
rs8037783	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83776800-83781800	Weak transcription	Gastric	stomach
2	chr15:83777000-83781800	Weak transcription	Aorta	Aorta
3	chr15:83777200-83798400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:83777600-83781400	Weak transcription	Psoas Muscle	Psoas
6	chr15:83777600-83786800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:83777800-83782800	Weak transcription	HSMM	muscle
8	chr15:83777800-83783600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:83777800-83798800	Weak transcription	HSMMtube	muscle
10	chr15:83778000-83782200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:83778000-83784200	Weak transcription	GM12878-XiMat	blood
12	chr15:83778200-83781200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:83778200-83781200	Enhancers	HUVEC	blood vessel
14	chr15:83778200-83801600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:83778200-83806400	Weak transcription	Dnd41	blood
16	chr15:83778400-83782000	Weak transcription	Fetal Brain Female	brain
17	chr15:83778400-83782600	Weak transcription	Primary B cells from cord blood	blood
18	chr15:83778600-83782800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:83778600-83782800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:83778600-83797600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:83778800-83799000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:83779200-83781200	Weak transcription	Fetal Muscle Leg	muscle
23	chr15:83779400-83781200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:83779400-83781800	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:83779400-83782000	Weak transcription	Esophagus	oesophagus
26	chr15:83779400-83782800	Weak transcription	Brain Germinal Matrix	brain
27	chr15:83779400-83812800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:83779600-83781400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr15:83780000-83782200	Enhancers	Lung	lung
30	chr15:83780000-83810000	Weak transcription	Fetal Lung	lung
31	chr15:83780200-83781200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:83780400-83781200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:83780400-83781400	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr15:83780600-83798600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:83780800-83781200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:83780800-83781200	Enhancers	Fetal Stomach	stomach
37	chr15:83780800-83781200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr15:83780800-83781200	Enhancers	Hela-S3	cervix
39	chr15:83780800-83782200	Enhancers	NH-A	brain
40	chr15:83780800-83782600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:83780800-83782600	Enhancers	Spleen	Spleen
42	chr15:83780800-83783000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr15:83780800-83783200	Enhancers	Left Ventricle	heart
44	chr15:83780800-83783200	Enhancers	Right Atrium	heart
45	chr15:83780800-83783400	Enhancers	Adipose Nuclei	Adipose
46	chr15:83781000-83781400	Flanking Active TSS	NHLF	lung
47	chr15:83781000-83782000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:83781000-83782200	Enhancers	Muscle Satellite Cultured Cells	--
49	chr15:83781000-83782600	Enhancers	Right Ventricle	heart
50	chr15:83781000-83783000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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