Variant report

Variant	rs34474492
Chromosome Location	chr7:50437746-50437747
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:50198448..50199345-chr7:50436815..50437783,2	K562	blood:
2	chr7:50181807..50182569-chr7:50437279..50438062,3	MCF-7	breast:
3	chr7:50432500..50434476-chr7:50436749..50439027,3	K562	blood:
4	chr7:50159494..50160043-chr7:50437107..50437785,2	MCF-7	breast:
5	chr7:50243467..50245301-chr7:50437515..50440449,2	K562	blood:
6	chr7:50244742..50245855-chr7:50436595..50438226,13	K562	blood:
7	chr7:50244683..50245796-chr7:50436572..50437838,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231681	Chromatin interaction
ENSG00000228005	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11575533	1.00[AMR][1000 genomes]
rs12113843	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50416800-50440000	Weak transcription	Gastric	stomach
2	chr7:50420000-50461800	Genic enhancers	Primary T cells fromperipheralblood	blood
3	chr7:50420600-50453400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
4	chr7:50428200-50441800	Genic enhancers	Fetal Thymus	thymus
5	chr7:50428600-50447800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:50430600-50459800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr7:50431200-50460600	Strong transcription	Dnd41	blood
8	chr7:50431400-50472600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:50432400-50440200	Strong transcription	Primary hematopoietic stem cells	blood
10	chr7:50432800-50438600	Weak transcription	Spleen	Spleen
11	chr7:50436400-50438000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:50436800-50438000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:50436800-50442800	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr7:50436800-50448200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr7:50437000-50438000	Enhancers	Primary T cells from cord blood	blood
16	chr7:50437000-50443000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:50437000-50453600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr7:50437200-50437800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:50437200-50437800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:50437200-50439000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:50437200-50440600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr7:50437200-50444000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:50437200-50446000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr7:50437200-50460200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr7:50437400-50438000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:50437400-50438000	Weak transcription	GM12878-XiMat	blood
27	chr7:50437400-50438600	Strong transcription	Primary B cells from peripheral blood	blood
28	chr7:50437400-50438600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr7:50437400-50439000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
30	chr7:50437400-50439000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:50437400-50439800	Strong transcription	Thymus	Thymus
32	chr7:50437400-50440600	Strong transcription	Primary B cells from cord blood	blood
33	chr7:50437400-50444400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr7:50437400-50445600	Strong transcription	K562	blood
35	chr7:50437400-50450400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:50437600-50443000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr7:50437600-50444000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links