Variant report

Variant	rs34478251
Chromosome Location	chr6:36201273-36201274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36198112..36199990-chr6:36201135..36202981,2	MCF-7	breast:
2	chr6:36197473..36201829-chr6:36205316..36210325,5	MCF-7	breast:
3	chr6:36200507..36203942-chr6:36214708..36217317,3	K562	blood:
4	chr6:36163215..36166247-chr6:36200158..36203502,4	K562	blood:
5	chr6:36191566..36194506-chr6:36199072..36201949,2	MCF-7	breast:
6	chr6:36162586..36164899-chr6:36199631..36203019,4	K562	blood:

Variant related genes	Relation type
ENSG00000246982	Chromatin interaction
ENSG00000096070	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12525283	0.91[AFR][1000 genomes]
rs34861886	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36164400-36203000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36166800-36201800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:36167000-36201800	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:36167200-36201400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:36167400-36201600	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:36167800-36201400	Strong transcription	H1 Cell Line	embryonic stem cell
7	chr6:36168000-36201400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:36169400-36201800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:36170000-36201800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:36172200-36202000	Strong transcription	Thymus	Thymus
11	chr6:36172600-36201400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr6:36172600-36201600	Strong transcription	Liver	Liver
13	chr6:36172600-36202000	Strong transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:36173400-36202600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:36174000-36204600	Strong transcription	Primary T cells from cord blood	blood
16	chr6:36174200-36201800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr6:36174400-36201600	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:36185800-36210600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:36186200-36202600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr6:36189000-36202600	Strong transcription	Fetal Muscle Leg	muscle
21	chr6:36189000-36204800	Strong transcription	Fetal Stomach	stomach
22	chr6:36189200-36201400	Strong transcription	Osteobl	bone
23	chr6:36189200-36202400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:36189400-36201400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:36189400-36201400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:36189600-36201400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:36189600-36201800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:36189600-36201800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:36189600-36204400	Strong transcription	Brain Germinal Matrix	brain
30	chr6:36189800-36202800	Strong transcription	Brain Hippocampus Middle	brain
31	chr6:36189800-36203800	Strong transcription	Stomach Smooth Muscle	stomach
32	chr6:36192200-36203400	Weak transcription	Right Atrium	heart
33	chr6:36192400-36202200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:36193000-36201800	Strong transcription	Adipose Nuclei	Adipose
35	chr6:36193000-36201800	Weak transcription	NHDF-Ad	bronchial
36	chr6:36193000-36202000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:36193000-36202000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:36193200-36201400	Strong transcription	Left Ventricle	heart
39	chr6:36193400-36201800	Strong transcription	HUVEC	blood vessel
40	chr6:36193400-36202000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:36193600-36201600	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:36193800-36206800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:36194200-36201800	Strong transcription	Lung	lung
44	chr6:36194600-36202200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:36194600-36207200	Weak transcription	Fetal Heart	heart
46	chr6:36194800-36201800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:36195000-36201800	Strong transcription	Brain Anterior Caudate	brain
48	chr6:36195200-36201600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:36195200-36204600	Strong transcription	Fetal Brain Female	brain
50	chr6:36195400-36201800	Strong transcription	Ovary	ovary

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