Variant report

Variant	rs34480368
Chromosome Location	chr6:34761174-34761175
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34759201..34762395-chr6:34788232..34791970,5	MCF-7	breast:
2	chr6:34759673..34761787-chr6:34787706..34790146,2	MCF-7	breast:
3	chr6:34392492..34394082-chr6:34758851..34761190,2	MCF-7	breast:
4	chr6:34758735..34762506-chr6:34853024..34858695,7	MCF-7	breast:
5	chr6:34758609..34760887-chr6:34760994..34763673,2	MCF-7	breast:
6	chr6:34662945..34666396-chr6:34758284..34762755,7	K562	blood:
7	chr6:34732771..34734494-chr6:34760287..34763087,2	K562	blood:
8	chr6:34759998..34762126-chr6:34777640..34780581,3	MCF-7	breast:
9	chr6:34760758..34763688-chr6:34766501..34768387,2	MCF-7	breast:
10	chr6:34663461..34666396-chr6:34758437..34761219,3	K562	blood:
11	chr6:34760038..34762450-chr6:35204039..35206411,2	K562	blood:
12	chr6:34759044..34761297-chr6:34854138..34856970,2	K562	blood:
13	chr6:34723754..34729214-chr6:34758122..34762652,9	MCF-7	breast:
14	chr6:34723785..34726777-chr6:34759451..34763099,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196821	Chromatin interaction
ENSG00000124614	Chromatin interaction
ENSG00000064999	Chromatin interaction
ENSG00000272288	Chromatin interaction
ENSG00000270800	Chromatin interaction
ENSG00000124562	Chromatin interaction
ENSG00000064995	Chromatin interaction
ENSG00000206717	Chromatin interaction
ENSG00000065060	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv885796	chr6:34739726-34823187	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv1015792	chr6:34741917-34887316	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
18	nsv1021733	chr6:34751052-34887316	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
19	nsv970328	chr6:34760989-34774305	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34758600-34761600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:34758800-34761200	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:34758800-34761200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr6:34758800-34761400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:34758800-34761400	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:34758800-34761600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:34758800-34761600	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:34759000-34761200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:34759000-34761400	Active TSS	Right Atrium	heart
10	chr6:34759000-34761400	Active TSS	HSMMtube	muscle
11	chr6:34759000-34761600	Active TSS	H1 Cell Line	embryonic stem cell
12	chr6:34759200-34761200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:34759200-34761200	Active TSS	Colon Smooth Muscle	Colon
14	chr6:34759200-34761600	Active TSS	GM12878-XiMat	blood
15	chr6:34760200-34761200	Flanking Active TSS	HUVEC	blood vessel
16	chr6:34760200-34761200	Flanking Active TSS	NH-A	brain
17	chr6:34760200-34761400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr6:34760200-34761400	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr6:34760200-34761400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:34760200-34761400	Flanking Active TSS	HMEC	breast
21	chr6:34760200-34761600	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr6:34760200-34761600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:34760200-34761600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:34760400-34761200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:34760400-34761200	Flanking Active TSS	Primary T cells from cord blood	blood
26	chr6:34760400-34761200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:34760400-34761200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr6:34760400-34761200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr6:34760400-34761200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr6:34760400-34761200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
31	chr6:34760400-34761200	Flanking Active TSS	Fetal Muscle Trunk	muscle
32	chr6:34760400-34761200	Flanking Active TSS	Fetal Muscle Leg	muscle
33	chr6:34760400-34761200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr6:34760400-34761400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr6:34760400-34761400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:34760400-34761400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:34760400-34761400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:34760400-34761400	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr6:34760400-34761400	Flanking Active TSS	Brain Cingulate Gyrus	brain
40	chr6:34760400-34761400	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr6:34760400-34761400	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr6:34760400-34761400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
43	chr6:34760400-34761400	Flanking Active TSS	Fetal Brain Female	brain
44	chr6:34760400-34761400	Flanking Active TSS	Fetal Thymus	thymus
45	chr6:34760400-34761400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr6:34760400-34761400	Flanking Active TSS	NHEK	skin
47	chr6:34760400-34761400	Flanking Active TSS	Osteobl	bone
48	chr6:34760400-34761600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr6:34760400-34761600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:34760600-34761400	Flanking Active TSS	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links