Variant report

Variant	rs34482203
Chromosome Location	chr3:42779336-42779337
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42777883..42779575-chr3:42780647..42782304,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12485678	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12486439	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12487055	0.92[EUR][1000 genomes]
rs12488174	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12490743	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12492886	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12493321	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495805	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13061576	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13064320	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13072026	0.93[EUR][1000 genomes]
rs13085272	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13090185	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13095730	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871121	0.95[ASN][1000 genomes]
rs2240860	0.93[EUR][1000 genomes]
rs2372111	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2372114	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs339693	0.83[ASN][1000 genomes]
rs339695	0.83[ASN][1000 genomes]
rs339696	0.83[ASN][1000 genomes]
rs34025253	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34188562	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34336220	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34510173	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34648075	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34974363	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35389123	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35488977	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35647815	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35659560	0.93[EUR][1000 genomes]
rs35697625	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35766391	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36061398	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3912102	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3912103	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3916333	0.92[EUR][1000 genomes]
rs4488806	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55799024	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56232384	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56978598	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62246602	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62246607	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62246631	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62250122	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66665035	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6765740	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6779396	0.93[EUR][1000 genomes]
rs6799524	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7429327	0.95[ASN][1000 genomes]
rs7617368	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013578	chr3:42747858-42817321	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999713	chr3:42749022-42817321	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42769600-42785600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:42769800-42787600	Weak transcription	Gastric	stomach
3	chr3:42774600-42780800	Weak transcription	Psoas Muscle	Psoas
4	chr3:42775600-42781000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:42775800-42780800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:42776800-42787000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:42777400-42780600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:42777600-42780600	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:42778000-42780600	Weak transcription	Brain Angular Gyrus	brain
10	chr3:42778000-42780600	Weak transcription	Brain Anterior Caudate	brain
11	chr3:42778000-42780800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:42778000-42780800	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:42778000-42781000	Weak transcription	HepG2	liver
14	chr3:42778000-42811000	Weak transcription	Spleen	Spleen
15	chr3:42778200-42780600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:42778200-42780600	Weak transcription	Brain Substantia Nigra	brain
17	chr3:42778200-42780600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:42778200-42788000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:42778400-42780400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:42778400-42780600	Weak transcription	Fetal Heart	heart
21	chr3:42778400-42780600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:42778400-42780800	Weak transcription	Left Ventricle	heart
23	chr3:42778400-42780800	Weak transcription	Right Atrium	heart
24	chr3:42778400-42786400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links