Variant report

Variant	rs34485921
Chromosome Location	chr4:106157870-106157871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106137303..106138957-chr4:106155928..106157974,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12498609	0.83[AFR][1000 genomes]
rs6831980	1.00[AMR][1000 genomes]
rs72955158	1.00[AMR][1000 genomes]
rs7679119	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs949681	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv879698	chr4:106155751-106309224	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106113600-106173800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:106113600-106195800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:106142000-106190800	Weak transcription	Small Intestine	intestine
4	chr4:106145600-106167400	Weak transcription	NHDF-Ad	bronchial
5	chr4:106148000-106192800	Weak transcription	Psoas Muscle	Psoas
6	chr4:106150200-106191400	Weak transcription	HUVEC	blood vessel
7	chr4:106153400-106164600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:106154000-106166200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr4:106154000-106198800	Weak transcription	Hela-S3	cervix
10	chr4:106154200-106164600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:106154600-106161200	Strong transcription	Primary hematopoietic stem cells	blood
12	chr4:106154800-106158800	Strong transcription	Fetal Thymus	thymus
13	chr4:106155000-106158200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:106155000-106158200	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr4:106155000-106158200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:106155000-106158200	Strong transcription	Fetal Stomach	stomach
17	chr4:106155000-106158200	Strong transcription	HepG2	liver
18	chr4:106155000-106158400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:106155000-106158400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:106155000-106158400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:106155000-106158400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr4:106155000-106158600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:106155000-106159800	Strong transcription	Primary T cells from cord blood	blood
24	chr4:106155000-106160800	Strong transcription	Fetal Lung	lung
25	chr4:106155000-106161000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:106155000-106163000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr4:106155000-106166400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr4:106155000-106168800	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr4:106155000-106169000	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr4:106155000-106176600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr4:106155200-106158000	Strong transcription	Brain Germinal Matrix	brain
32	chr4:106155200-106158200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr4:106155200-106158200	Strong transcription	Adipose Nuclei	Adipose
34	chr4:106155200-106158200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:106155200-106158200	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr4:106155200-106158200	Strong transcription	NHEK	skin
37	chr4:106155200-106158400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr4:106155200-106158400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:106155200-106158400	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr4:106155200-106158400	Strong transcription	Fetal Kidney	kidney
41	chr4:106155200-106158800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:106155200-106158800	Strong transcription	Fetal Intestine Large	intestine
43	chr4:106155200-106159400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:106155200-106160400	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr4:106155200-106161400	Strong transcription	Liver	Liver
46	chr4:106155200-106161800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:106155200-106161800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr4:106155400-106158000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:106155400-106158000	Strong transcription	Fetal Brain Female	brain
50	chr4:106155400-106158000	Strong transcription	Skeletal Muscle Female	skeletal muscle

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