Variant report

Variant	rs34487194
Chromosome Location	chr14:41608050-41608051
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10782400	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12878606	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959921	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1959922	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4128078	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4265715	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:63 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041122	chr14:40956143-41869421	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv564464	chr14:40957542-41871875	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv534448	chr14:40960013-41634431	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1038788	chr14:41216776-41647283	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542053	chr14:41216776-41647283	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv456224	chr14:41432350-42059281	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv564471	chr14:41432350-42059281	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1053254	chr14:41436749-41677315	Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv542054	chr14:41436749-41677315	Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1045762	chr14:41450583-41647283	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv542055	chr14:41450583-41647283	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv901698	chr14:41495908-41610224	Enhancers Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
13	nsv1047871	chr14:41516582-41647283	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
14	nsv974277	chr14:41531856-41647876	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription	lncRNA	n/a	inside rSNPs	diseases
15	nsv901699	chr14:41540685-41674903	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv901700	chr14:41565756-41610224	Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
17	nsv901701	chr14:41571738-41668334	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
18	esv2757562	chr14:41577085-41699404	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	esv2759981	chr14:41577085-41699404	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv901703	chr14:41579517-41751162	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv832778	chr14:41581404-41738006	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv901704	chr14:41587669-41674903	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv901705	chr14:41587669-41678466	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv901706	chr14:41587669-41803232	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	esv3361965	chr14:41596251-41628384	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
26	nsv564472	chr14:41599390-41658867	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
27	nsv901707	chr14:41599390-41668334	Enhancers ZNF genes & repeats Active TSS Weak transcription Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
28	nsv901708	chr14:41599390-41670102	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
29	nsv901709	chr14:41599390-41674903	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	nsv901710	chr14:41599390-41678466	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	nsv901711	chr14:41601018-41658449	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
32	esv2830248	chr14:41601018-41668334	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
33	nsv564473	chr14:41601018-41668334	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
34	nsv901712	chr14:41601018-41670102	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
35	nsv901713	chr14:41601018-41674903	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
36	nsv901714	chr14:41601018-41678466	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
37	nsv564474	chr14:41602007-41668334	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
38	nsv564475	chr14:41602007-41670102	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
39	esv3341833	chr14:41602251-41626151	Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
40	esv3424459	chr14:41602251-41630519	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
41	nsv819212	chr14:41604134-41668334	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
42	nsv819390	chr14:41604134-41670102	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
43	nsv564476	chr14:41605556-41641506	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
44	nsv564477	chr14:41605556-41668334	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
45	nsv564478	chr14:41605556-41669205	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
46	nsv564479	chr14:41605556-41674903	Active TSS Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
47	nsv564480	chr14:41605556-41678466	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
48	nsv564481	chr14:41606851-41641506	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
49	nsv901715	chr14:41606851-41651496	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
50	nsv1053958	chr14:41606851-41657337	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:41606200-41615800	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links