Variant report

Variant	rs34489947
Chromosome Location	chr3:49259355-49259356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13075419	1.00[AMR][1000 genomes]
rs13081357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34294515	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834686	chr3:49106047-49270556	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1008750	chr3:49208815-49362401	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49250200-49274000	Weak transcription	Osteobl	bone
2	chr3:49251600-49265400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:49252000-49265600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:49255800-49259600	Weak transcription	Spleen	Spleen
5	chr3:49255800-49264800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:49255800-49265600	Weak transcription	Aorta	Aorta
7	chr3:49256600-49265400	Weak transcription	Fetal Heart	heart
8	chr3:49256600-49275800	Weak transcription	NHLF	lung
9	chr3:49256800-49259400	Weak transcription	NHEK	skin
10	chr3:49256800-49260800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr3:49256800-49262800	Weak transcription	Ovary	ovary
12	chr3:49256800-49264000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:49256800-49264600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:49256800-49265200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:49256800-49265200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:49256800-49266000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:49257200-49260800	Weak transcription	Right Ventricle	heart
18	chr3:49257400-49262200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:49258000-49259600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:49258000-49264200	Weak transcription	Adipose Nuclei	Adipose
21	chr3:49258800-49259800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr3:49258800-49260000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr3:49259000-49259800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:49259000-49260000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:49259000-49260000	Enhancers	Placenta	Placenta
26	chr3:49259200-49259600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:49259200-49263000	Weak transcription	Fetal Muscle Leg	muscle

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