Variant report

Variant	rs34492312
Chromosome Location	chr10:902924-902925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:897785..900059-chr10:902381..904069,2	K562	blood:
2	chr10:902184..903892-chr10:910884..912602,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11812721	1.00[AMR][1000 genomes]
rs11818694	1.00[AMR][1000 genomes]
rs28463752	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916591	chr10:224406-1088734	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv948602	chr10:708293-944641	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv949063	chr10:708293-974870	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
7	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
8	nsv1043812	chr10:776547-981126	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv540406	chr10:776547-981126	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
11	nsv948978	chr10:813426-1019115	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1048707	chr10:834439-915534	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:852200-956400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:870600-959400	Weak transcription	Stomach Mucosa	stomach
3	chr10:875400-903000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:883200-917200	Weak transcription	Colonic Mucosa	Colon
5	chr10:886800-924400	Weak transcription	Fetal Brain Male	brain
6	chr10:890400-916000	Weak transcription	Aorta	Aorta
7	chr10:892600-903000	Weak transcription	Brain Angular Gyrus	brain
8	chr10:892600-909400	Weak transcription	Small Intestine	intestine
9	chr10:892800-909000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:892800-909000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:893000-907600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:893000-909400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr10:893200-905400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:893200-907000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:893200-908200	Weak transcription	Spleen	Spleen
16	chr10:893400-907800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:894000-912400	Weak transcription	Psoas Muscle	Psoas
18	chr10:894400-906200	Weak transcription	Ovary	ovary
19	chr10:895400-903600	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr10:895600-906000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:896200-909600	Weak transcription	Brain Germinal Matrix	brain
22	chr10:896600-905800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:897200-903800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:897200-929600	Strong transcription	Primary T cells from cord blood	blood
25	chr10:897600-903400	Strong transcription	K562	blood
26	chr10:897600-906000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:897800-905200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:898000-903800	Strong transcription	Placenta	Placenta
29	chr10:898000-904000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:898000-909400	Weak transcription	Esophagus	oesophagus
31	chr10:898000-911200	Weak transcription	Pancreas	Pancrea
32	chr10:898200-903800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:899000-932000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr10:899200-903000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:899200-903800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:899200-903800	Strong transcription	NHEK	skin
37	chr10:899200-904200	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr10:899200-913000	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:899200-913000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr10:899400-903200	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:899400-904200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:899400-920200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr10:899600-903000	Strong transcription	Fetal Muscle Leg	muscle
44	chr10:899600-903200	Strong transcription	HSMMtube	muscle
45	chr10:899600-903800	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr10:899600-911600	Strong transcription	GM12878-XiMat	blood
47	chr10:899800-903600	Strong transcription	HepG2	liver
48	chr10:899800-931200	Strong transcription	Primary B cells from cord blood	blood
49	chr10:900000-903200	Strong transcription	Liver	Liver
50	chr10:900000-903600	Strong transcription	Duodenum Mucosa	Duodenum

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