Variant report

Variant	rs34494278
Chromosome Location	chr15:76206207-76206208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76195569..76197871-chr15:76205442..76207733,2	K562	blood:
2	chr15:76194938..76197869-chr15:76206105..76209095,4	MCF-7	breast:
3	chr15:76206066..76207638-chr15:76207776..76210184,2	K562	blood:
4	chr15:76195569..76197871-chr15:76204617..76208764,4	K562	blood:
5	chr15:76136320..76138116-chr15:76204520..76207096,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167196	Chromatin interaction
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34645136	1.00[AMR][1000 genomes]
rs67194855	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76197000-76210800	Weak transcription	Aorta	Aorta
2	chr15:76197000-76214600	Weak transcription	Small Intestine	intestine
3	chr15:76197200-76206600	Weak transcription	Thymus	Thymus
4	chr15:76197200-76216800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:76197200-76216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:76197600-76210200	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:76197800-76206600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:76197800-76206800	Weak transcription	Lung	lung
9	chr15:76197800-76214400	Weak transcription	Stomach Mucosa	stomach
10	chr15:76197800-76217400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:76198000-76206800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:76198000-76206800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr15:76198000-76214400	Weak transcription	Esophagus	oesophagus
14	chr15:76198000-76214400	Weak transcription	Pancreas	Pancrea
15	chr15:76198000-76214600	Weak transcription	Right Ventricle	heart
16	chr15:76198000-76231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:76198200-76208000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr15:76198400-76208600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr15:76198400-76214200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:76198400-76225000	Weak transcription	Fetal Kidney	kidney
22	chr15:76198600-76206400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr15:76198600-76217000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:76198600-76226400	Weak transcription	Fetal Brain Male	brain
25	chr15:76199000-76208600	Weak transcription	NHLF	lung
26	chr15:76199000-76215800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:76199200-76212000	Weak transcription	Psoas Muscle	Psoas
28	chr15:76201000-76206600	Weak transcription	Left Ventricle	heart
29	chr15:76201200-76206800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:76201200-76207600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:76201200-76214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:76201800-76206400	Weak transcription	NHEK	skin
33	chr15:76201800-76207200	Weak transcription	Fetal Intestine Small	intestine
34	chr15:76201800-76208600	Weak transcription	Fetal Heart	heart
35	chr15:76202200-76207600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:76203800-76210200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:76203800-76230200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:76204200-76207200	Strong transcription	Primary T cells from cord blood	blood
39	chr15:76204800-76206800	Weak transcription	Fetal Stomach	stomach
40	chr15:76204800-76207600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:76205200-76211000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:76205200-76213200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:76205400-76206800	Strong transcription	Fetal Thymus	thymus
44	chr15:76205400-76207000	Strong transcription	Rectal Smooth Muscle	rectum
45	chr15:76205400-76207200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr15:76205400-76207400	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr15:76205400-76207400	Strong transcription	Primary hematopoietic stem cells	blood
48	chr15:76205400-76207400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr15:76205400-76207400	Strong transcription	Liver	Liver
50	chr15:76205400-76207400	Strong transcription	Brain Germinal Matrix	brain

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