Variant report

Variant	rs34496415
Chromosome Location	chr9:139921814-139921815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:61)
Chromatin interactive
region (count:29)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr9:139921798-139922088	A549	lung:	n/a	n/a
2	MAX	chr9:139921721-139924181	MCF-7	breast:	n/a	chr9:139922260-139922270 chr9:139922225-139922235
3	ZKSCAN1	chr9:139921757-139921950	Hela-S3	cervix:	n/a	n/a
4	MXI1	chr9:139919677-139924307	SK-N-SH	brain:	n/a	chr9:139920246-139920261 chr9:139920244-139920259
5	MAX	chr9:139921561-139924291	A549	lung:	n/a	chr9:139922260-139922270 chr9:139922225-139922235
6	MXI1	chr9:139921761-139923641	IMR90	lung:	n/a	n/a
7	SMARCB1	chr9:139921811-139922377	Hela-S3	cervix:	n/a	chr9:139922274-139922283
8	ZBTB7A	chr9:139921701-139922498	ECC-1	luminal epithelium:	n/a	n/a
9	MAZ	chr9:139921462-139923610	IMR90	lung:	n/a	chr9:139922260-139922270 chr9:139922225-139922235
10	ZBTB7A	chr9:139921744-139922396	ECC-1	luminal epithelium:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:139921813-139921863	PFSK-1	brain:	n/a
2	chr9:139921813-139921863	SK-N-MC	brain:	n/a
3	chr9:139921813-139921863	NHDF-neo	bronchial:	n/a
4	chr9:139921813-139921863	LNCaP	prostate:	n/a
5	chr9:139921813-139921863	AG09309	skin:	n/a
6	chr9:139921813-139921863	HCT-116	colon:	n/a
7	chr9:139921813-139921863	CMK	blood:	n/a
8	chr9:139921813-139921863	HRCEpiC	kidney:	n/a
9	chr9:139921813-139921863	HL-60	blood:	n/a
10	chr9:139921813-139921863	GM12878	blood:	n/a
11	chr9:139921813-139921863	IMR90	lung:	fetal
12	chr9:139921813-139921863	HAEpiC	amniotic membrane:	n/a
13	chr9:139921813-139921863	HepG2	liver:	n/a
14	chr9:139921813-139921863	GM19239	blood:	n/a
15	chr9:139921813-139921863	Hepatocyte	liver:	n/a
16	chr9:139921813-139921863	AG04449	skin:	fetal
17	chr9:139921813-139921863	Hela-S3	cervix:	n/a
18	chr9:139921813-139921863	ECC-1	luminal epithelium:	n/a
19	chr9:139921813-139921863	NHBE	bronchial:	n/a
20	chr9:139921813-139921863	SKMC	muscle:	n/a
21	chr9:139921813-139921863	HRPEpiC	eye:	n/a
22	chr9:139921813-139921863	HEK293	kidney:	embryo
23	chr9:139921813-139921863	HRE	kidney:	n/a
24	chr9:139921813-139921863	HNPCEpiC	eye:	n/a
25	chr9:139921813-139921863	Caco-2	colon:	n/a
26	chr9:139921813-139921863	NH-A	brain:	n/a
27	chr9:139921813-139921863	NT2-D1	testis:	n/a
28	chr9:139921813-139921863	GM12892	blood:	n/a
29	chr9:139921813-139921863	SK-N-SH_RA	brain:	n/a
30	chr9:139921813-139921863	MCF-7	breast:	n/a
31	chr9:139921813-139921863	HEEpiC	esophagus:	n/a
32	chr9:139921813-139921863	NB4	blood:	n/a
33	chr9:139921813-139921863	PANC-1	pancreas:	n/a
34	chr9:139921813-139921863	BE2_C	brain:	n/a
35	chr9:139921813-139921863	HCM	heart:	n/a
36	chr9:139921813-139921863	H1-hESC	embryonic stem cell:	embryo
37	chr9:139921813-139921863	AG04450	lung:	fetal
38	chr9:139921813-139921863	GM06990	blood:	n/a
39	chr9:139921813-139921863	GM12891	blood:	n/a
40	chr9:139921813-139921863	AoSMC	blood vessel:	n/a
41	chr9:139921813-139921863	SAEC	small airway:	n/a
42	chr9:139921813-139921863	T-47D	breast:	n/a
43	chr9:139921813-139921863	AG10803	skin:	n/a
44	chr9:139921813-139921863	HCPEpiC	choroid plexus:	n/a
45	chr9:139921813-139921863	HPAEpiC	pulmonary alveolar:	n/a
46	chr9:139921813-139921863	SK-N-SH	brain:	n/a
47	chr9:139921813-139921863	MCF10A-Er-Src	breast:	n/a
48	chr9:139921813-139921863	ProgFib	skin:	n/a
49	chr9:139921813-139921863	Jurkat	blood:	n/a
50	chr9:139921813-139921863	PrEC	prostate:	n/a

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:139919938..139922750-chr9:139930967..139935047,3	K562	blood:
2	chr9:139872018..139873607-chr9:139920682..139923548,2	K562	blood:
3	chr9:139918301..139927249-chr9:139936258..139942370,21	MCF-7	breast:
4	chr9:139742018..139745799-chr9:139919538..139925328,8	MCF-7	breast:
5	chr9:139683659..139687292-chr9:139920616..139923884,4	MCF-7	breast:
6	chr9:139836491..139840843-chr9:139920877..139924515,5	K562	blood:
7	chr9:139920807..139923446-chr9:140116890..140119444,3	MCF-7	breast:
8	chr9:139919301..139922629-chr9:140133751..140137012,4	MCF-7	breast:
9	chr9:139835527..139839374-chr9:139921629..139923901,3	K562	blood:
10	chr9:139920279..139925059-chr9:139978182..139982194,5	MCF-7	breast:
11	chr9:139836105..139846821-chr9:139919094..139924819,24	MCF-7	breast:
12	chr9:139921431..139923652-chr9:140093860..140095528,2	K562	blood:
13	chr9:139699972..139703732-chr9:139919603..139923432,3	MCF-7	breast:
14	chr9:139693327..139695120-chr9:139920387..139922452,2	K562	blood:
15	chr9:139917165..139921926-chr9:140120629..140123772,4	MCF-7	breast:
16	chr9:139837344..139842228-chr9:139920048..139923537,8	MCF-7	breast:
17	chr9:139901273..139904248-chr9:139920893..139923855,2	MCF-7	breast:
18	chr9:139842379..139846255-chr9:139920435..139923708,4	MCF-7	breast:
19	chr9:139920358..139921879-chr9:139957601..139959975,2	MCF-7	breast:
20	chr9:139921526..139924056-chr9:139944120..139947327,3	K562	blood:
21	chr9:139906068..139907647-chr9:139920874..139923043,2	MCF-7	breast:
22	chr9:139920547..139923161-chr9:140094301..140096254,2	MCF-7	breast:
23	chr9:139885641..139893253-chr9:139914079..139925631,41	MCF-7	breast:
24	chr9:139884297..139893800-chr9:139910309..139932457,68	MCF-7	breast:
25	chr9:139439541..139441436-chr9:139920974..139923284,2	MCF-7	breast:
26	chr9:139920261..139922257-chr9:140133712..140136318,3	MCF-7	breast:
27	chr9:139619899..139624270-chr9:139920948..139923440,3	MCF-7	breast:
28	chr9:139740616..139744257-chr9:139921749..139926263,5	MCF-7	breast:
29	chr9:139905615..139907751-chr9:139919690..139922282,2	K562	blood:

No data

Variant related genes	Relation type
C9orf139	TF binding region
C9orf139	CpG island
ENSG00000148362	Chromatin interaction
ENSG00000177943	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000237886	Chromatin interaction
ENSG00000148400	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000272679	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000265181	Chromatin interaction
ENSG00000231864	Chromatin interaction
ENSG00000184925	Chromatin interaction
ENSG00000169583	Chromatin interaction
ENSG00000233198	Chromatin interaction
ENSG00000236394	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000107331	Chromatin interaction
ENSG00000107317	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000235117	Chromatin interaction
ENSG00000197191	Chromatin interaction
ENSG00000176919	Chromatin interaction
ENSG00000228544	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000054148	Chromatin interaction
ENSG00000176058	Chromatin interaction
ENSG00000273066	Chromatin interaction
ENSG00000159069	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1139444	0.82[EUR][1000 genomes]
rs12337910	0.82[EUR][1000 genomes]
rs12551220	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13285135	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34039859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34558922	0.84[EUR][1000 genomes]
rs35063411	0.84[EUR][1000 genomes]
rs35529305	0.84[EUR][1000 genomes]
rs35590326	0.84[EUR][1000 genomes]
rs35902749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45551734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58275874	0.81[EUR][1000 genomes]
rs66526117	0.81[EUR][1000 genomes]
rs67181987	0.81[EUR][1000 genomes]
rs7026504	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:80 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
2	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
3	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
4	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
5	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
6	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
7	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
8	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
9	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
10	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
11	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
12	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
13	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
14	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
15	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
16	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
17	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
18	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
19	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
20	nsv894483	chr9:139709976-139963091	Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	119 gene(s)	inside rSNPs	diseases
21	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
22	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
23	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
24	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
25	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
26	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
27	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
28	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
29	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
30	nsv894500	chr9:139823670-139930945	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
31	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
32	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
33	nsv894503	chr9:139830940-139987350	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
34	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases
35	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
36	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
37	nsv894507	chr9:139860264-139995065	Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
38	nsv894514	chr9:139860631-139943112	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	79 gene(s)	inside rSNPs	diseases
39	nsv894515	chr9:139860631-139963091	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
40	nsv894517	chr9:139860631-139977351	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
41	nsv894516	chr9:139860631-139979276	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
42	nsv894518	chr9:139860631-139995065	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
43	nsv466690	chr9:139860631-140042320	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
44	nsv615989	chr9:139860631-140042320	Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
45	nsv615990	chr9:139860631-140068342	Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	118 gene(s)	inside rSNPs	diseases
46	nsv894519	chr9:139860631-140123584	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
47	nsv894520	chr9:139860631-140135118	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	185 gene(s)	inside rSNPs	diseases
48	nsv894521	chr9:139860631-140228092	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
49	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
50	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139901000-139922400	Weak transcription	Small Intestine	intestine
2	chr9:139912800-139922000	Weak transcription	Ovary	ovary
3	chr9:139915000-139922400	Enhancers	Placenta	Placenta
4	chr9:139919400-139922200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:139919600-139922000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:139919600-139922000	Flanking Active TSS	Brain Anterior Caudate	brain
7	chr9:139919600-139922400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:139919800-139922200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:139919800-139922200	Flanking Active TSS	Fetal Brain Female	brain
10	chr9:139919800-139922400	Enhancers	Stomach Mucosa	stomach
11	chr9:139919800-139922800	Enhancers	Primary B cells from peripheral blood	blood
12	chr9:139920200-139922200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:139920200-139922200	Flanking Active TSS	Brain Germinal Matrix	brain
14	chr9:139920200-139922200	Flanking Active TSS	Colonic Mucosa	Colon
15	chr9:139920400-139922000	Flanking Active TSS	Brain Substantia Nigra	brain
16	chr9:139920400-139922200	Flanking Active TSS	Hela-S3	cervix
17	chr9:139920800-139922000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
18	chr9:139920800-139922000	Enhancers	Lung	lung
19	chr9:139920800-139922200	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr9:139920800-139922400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:139921000-139922000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr9:139921000-139922200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr9:139921000-139922200	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr9:139921200-139922000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:139921200-139922200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr9:139921200-139922400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr9:139921200-139922400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:139921200-139922400	Flanking Active TSS	Dnd41	blood
29	chr9:139921400-139922000	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr9:139921400-139922000	Enhancers	Right Atrium	heart
31	chr9:139921400-139922000	Bivalent/Poised TSS	Thymus	Thymus
32	chr9:139921400-139922200	Enhancers	Primary B cells from cord blood	blood
33	chr9:139921400-139922200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr9:139921400-139922200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
35	chr9:139921400-139923000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:139921400-139923400	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr9:139921600-139922000	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:139921600-139922000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
39	chr9:139921600-139922000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:139921600-139922000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr9:139921600-139922000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:139921600-139922000	Flanking Active TSS	Fetal Brain Male	brain
43	chr9:139921600-139922000	Enhancers	Placenta Amnion	Placenta Amnion
44	chr9:139921600-139922000	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr9:139921600-139922000	Flanking Active TSS	A549	lung
46	chr9:139921600-139922000	Flanking Active TSS	NHDF-Ad	bronchial
47	chr9:139921600-139922200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr9:139921600-139922200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr9:139921600-139922200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr9:139921600-139922200	Flanking Active TSS	Primary T cells fromperipheralblood	blood

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