Variant report

Variant	rs34497162
Chromosome Location	chr12:48360473-48360474
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832401	chr12:48347453-48477999	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv519174	chr12:48359984-48365265	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48358200-48360800	Weak transcription	Aorta	Aorta
2	chr12:48358200-48363200	Weak transcription	Brain Substantia Nigra	brain
3	chr12:48358200-48364200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:48358200-48366200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:48358200-48366200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr12:48358400-48360600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr12:48358400-48360800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:48358400-48360800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:48358400-48361000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:48358400-48361000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr12:48358400-48361000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr12:48358400-48361000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:48358400-48361000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr12:48358400-48361000	Weak transcription	Liver	Liver
15	chr12:48358400-48361000	Weak transcription	Lung	lung
16	chr12:48358400-48361400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr12:48358400-48362000	Weak transcription	Esophagus	oesophagus
18	chr12:48358400-48362400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr12:48358400-48362400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr12:48358400-48362400	Weak transcription	Psoas Muscle	Psoas
21	chr12:48358400-48362800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr12:48358400-48362800	Weak transcription	NH-A	brain
23	chr12:48358400-48364600	Weak transcription	Ovary	ovary
24	chr12:48358400-48365000	Weak transcription	Osteobl	bone
25	chr12:48358400-48365200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr12:48358400-48366400	Weak transcription	Fetal Brain Male	brain
27	chr12:48358400-48367800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr12:48358400-48367800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr12:48358400-48369800	Weak transcription	Brain Angular Gyrus	brain
30	chr12:48358400-48373000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr12:48358600-48360800	Weak transcription	Adipose Nuclei	Adipose
32	chr12:48358600-48360800	Weak transcription	Brain Anterior Caudate	brain
33	chr12:48358600-48360800	Strong transcription	Fetal Muscle Trunk	muscle
34	chr12:48358600-48361000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr12:48358600-48361000	Weak transcription	Colon Smooth Muscle	Colon
36	chr12:48358600-48363000	Strong transcription	A549	lung
37	chr12:48358600-48363200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr12:48358600-48363400	Strong transcription	Fetal Thymus	thymus
39	chr12:48358600-48363600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr12:48358600-48363800	Weak transcription	Brain Hippocampus Middle	brain
41	chr12:48358600-48365200	Weak transcription	HSMMtube	muscle
42	chr12:48358600-48366600	Weak transcription	Fetal Lung	lung
43	chr12:48358600-48369400	Weak transcription	Fetal Kidney	kidney
44	chr12:48358600-48381400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr12:48358800-48362000	Weak transcription	Small Intestine	intestine
46	chr12:48358800-48366000	Weak transcription	HepG2	liver
47	chr12:48358800-48366200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr12:48359000-48362400	Strong transcription	NHEK	skin
49	chr12:48359000-48364000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr12:48359200-48360800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links