Variant report

Variant	rs34497591
Chromosome Location	chr1:94591795-94591796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10782976	0.88[ASN][1000 genomes]
rs11165081	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11165083	0.81[EUR][1000 genomes]
rs11802196	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11803430	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12407620	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12730118	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17394432	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17398522	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931567	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931568	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931571	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931572	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2151846	0.87[EUR][1000 genomes]
rs34781620	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761911	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3789451	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4147803	0.91[ASN][1000 genomes]
rs4147804	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58544825	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6541410	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6686599	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6698524	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701591	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512276	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7546201	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7550646	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv870932	chr1:94579053-94607607	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv871679	chr1:94579426-94598568	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv871502	chr1:94579426-94607607	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv871306	chr1:94579426-94609478	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv871210	chr1:94579426-94629643	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94564600-94591800	Weak transcription	Right Atrium	heart
2	chr1:94586200-94591800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr1:94587000-94592400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:94588600-94595000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:94588600-94596400	Weak transcription	Osteobl	bone
6	chr1:94588600-94596600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:94590600-94591800	Weak transcription	HUVEC	blood vessel
8	chr1:94590800-94592200	Enhancers	A549	lung
9	chr1:94591400-94591800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
10	chr1:94591400-94592000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:94591400-94592000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:94591400-94592000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:94591400-94592000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr1:94591400-94592000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:94591400-94592000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:94591400-94592000	Enhancers	Fetal Muscle Leg	muscle
17	chr1:94591400-94592000	Enhancers	Placenta	Placenta
18	chr1:94591400-94592000	Enhancers	Left Ventricle	heart
19	chr1:94591400-94592000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr1:94591400-94592200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr1:94591400-94592200	Enhancers	Liver	Liver
22	chr1:94591400-94592200	Enhancers	Fetal Kidney	kidney
23	chr1:94591400-94592400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr1:94591400-94592400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:94591400-94592400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:94591400-94592400	Enhancers	Adipose Nuclei	Adipose
27	chr1:94591600-94591800	Bivalent Enhancer	Pancreas	Pancrea
28	chr1:94591600-94592000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr1:94591600-94592000	Enhancers	Fetal Intestine Small	intestine
30	chr1:94591600-94592000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr1:94591600-94592200	Enhancers	H1 Cell Line	embryonic stem cell
32	chr1:94591600-94592200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr1:94591600-94592200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr1:94591600-94592400	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr1:94591600-94592400	Flanking Active TSS	HepG2	liver
36	chr1:94591600-94592400	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links