Variant report

Variant	rs34501067
Chromosome Location	chr2:126183491-126183492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11886543	0.90[EUR][1000 genomes]
rs13006314	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13023926	0.88[EUR][1000 genomes]
rs13024249	0.83[AMR][1000 genomes]
rs13025656	0.83[AMR][1000 genomes]
rs13030831	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13036079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13036195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17629296	0.83[AMR][1000 genomes]
rs34008598	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34099871	0.83[AMR][1000 genomes]
rs34321799	0.83[AMR][1000 genomes]
rs34321922	0.83[AMR][1000 genomes]
rs34361321	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34553049	0.95[EUR][1000 genomes]
rs34693807	0.83[AMR][1000 genomes]
rs34799276	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34870179	0.83[AMR][1000 genomes]
rs34961659	0.83[AMR][1000 genomes]
rs35318750	0.83[AMR][1000 genomes]
rs35355440	0.83[AMR][1000 genomes]
rs35878249	0.83[AMR][1000 genomes]
rs71338999	0.89[EUR][1000 genomes]
rs71339000	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71413403	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs71413404	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs71413407	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71413408	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71413409	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71413414	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71429993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999840	chr2:125902993-126683646	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1012762	chr2:125902993-126755660	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv535915	chr2:125902993-126755660	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1001555	chr2:125904415-126630781	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv535916	chr2:125904415-126630781	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv998839	chr2:126102160-126641282	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv533313	chr2:126129440-126630783	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1000070	chr2:126138320-126915275	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:126182400-126185000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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