Variant report

Variant	rs34502930
Chromosome Location	chr12:60012017-60012018
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:59988960..59991017-chr12:60010230..60012662,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118596	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv899131	chr12:59942122-60124089	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1048949	chr12:59974039-60041477	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1038100	chr12:59983391-60018745	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv983450	chr12:60011741-60014929	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:59992600-60013400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:60006200-60012200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:60006200-60014400	Weak transcription	Pancreas	Pancrea
4	chr12:60006200-60019400	Weak transcription	Thymus	Thymus
5	chr12:60006400-60012400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr12:60006400-60031400	Weak transcription	Left Ventricle	heart
7	chr12:60006800-60013400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:60007000-60013200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr12:60007200-60012800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr12:60007200-60031600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:60007400-60012400	Weak transcription	Primary T cells from cord blood	blood
12	chr12:60007400-60013400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr12:60007600-60013200	Weak transcription	Primary B cells from cord blood	blood
14	chr12:60007600-60013400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr12:60007800-60013600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr12:60008000-60012600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr12:60008400-60012200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr12:60009600-60020400	Weak transcription	NHDF-Ad	bronchial
19	chr12:60009800-60012800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr12:60009800-60013400	Weak transcription	Brain Hippocampus Middle	brain
21	chr12:60009800-60014200	Weak transcription	Aorta	Aorta
22	chr12:60009800-60033200	Weak transcription	Ovary	ovary
23	chr12:60010000-60015200	Enhancers	Fetal Heart	heart
24	chr12:60010800-60015400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr12:60011800-60014400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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