Variant report

Variant	rs34504974
Chromosome Location	chr22:23479758-23479759
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr22:23479691-23480477	GM19099	blood:	n/a	n/a
2	YY1	chr22:23479636-23479939	GM12878	blood:	n/a	n/a
3	POLR2A	chr22:23479478-23479794	GM12878	blood:	n/a	n/a
4	RELA	chr22:23479709-23480487	GM18951	blood:	n/a	n/a
5	IKZF1	chr22:23479607-23481463	GM12878	blood:	n/a	n/a
6	EBF1	chr22:23479350-23479790	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000272019	TF binding region
RTDR1	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803110	chr22:22731758-23497674	Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv915235	chr22:22971768-23650987	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
3	esv3388845	chr22:22973346-23652447	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	100 gene(s)	inside rSNPs	diseases
4	nsv531799	chr22:22993679-23642142	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
5	nsv1061433	chr22:22997799-23649107	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
6	nsv521695	chr22:22998337-23648009	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
7	nsv915236	chr22:22998337-23650987	Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
8	nsv588512	chr22:22998337-23667731	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
9	nsv531800	chr22:23002708-23648163	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
10	nsv916593	chr22:23002709-23648790	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
11	nsv993496	chr22:23002709-23654222	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
12	nsv1067002	chr22:23007167-23643363	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
13	nsv1067324	chr22:23007367-23654223	Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
14	nsv533839	chr22:23012013-23643223	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
15	nsv916933	chr22:23012069-23654237	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
16	nsv531801	chr22:23028586-23657804	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
17	nsv531802	chr22:23046186-23627391	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	diseases
18	nsv1060509	chr22:23055148-23648719	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	83 gene(s)	inside rSNPs	diseases
19	nsv1056324	chr22:23055148-23750989	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
20	nsv1062780	chr22:23060449-23648719	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
21	nsv948942	chr22:23063178-23645718	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
22	nsv1063200	chr22:23097177-23643224	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	80 gene(s)	inside rSNPs	diseases
23	nsv949250	chr22:23157485-23645718	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
24	esv34158	chr22:23216762-23499513	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
25	nsv1057659	chr22:23400739-24138788	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
26	nsv3573	chr22:23441543-23485820	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
27	nsv544616	chr22:23474827-23495231	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
28	esv3455633	chr22:23476452-23481350	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
29	esv3455629	chr22:23477477-23480325	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
30	nsv819622	chr22:23477925-23479831	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region	3 gene(s)	inside rSNPs	diseases
31	esv3455628	chr22:23477937-23480172	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
32	nsv512647	chr22:23478273-23480008	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription	TF binding region	3 gene(s)	inside rSNPs	diseases
33	esv3455630	chr22:23478357-23479772	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region	3 gene(s)	inside rSNPs	diseases
34	esv1808801	chr22:23478573-23489042	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
35	esv1812488	chr22:23478573-23489042	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
36	esv1801510	chr22:23478611-23491000	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:23453200-23484800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:23470800-23483600	Weak transcription	Fetal Intestine Small	intestine
3	chr22:23471400-23483600	Weak transcription	Brain Anterior Caudate	brain
4	chr22:23471400-23483600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr22:23476200-23483800	Enhancers	Primary T cells fromperipheralblood	blood
6	chr22:23476600-23483600	Weak transcription	Fetal Stomach	stomach
7	chr22:23476800-23483800	Weak transcription	Right Ventricle	heart
8	chr22:23477000-23483800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr22:23477800-23480000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr22:23477800-23481400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr22:23477800-23481600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr22:23477800-23481800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr22:23477800-23483600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr22:23477800-23484200	Enhancers	Primary B cells from cord blood	blood
15	chr22:23477800-23485000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr22:23478000-23481800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr22:23478000-23484000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr22:23478200-23479800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr22:23478200-23479800	Enhancers	Duodenum Mucosa	Duodenum
20	chr22:23478200-23481200	Enhancers	Primary T cells from cord blood	blood
21	chr22:23478200-23481400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr22:23478200-23481400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr22:23478200-23481400	Enhancers	Fetal Thymus	thymus
24	chr22:23478200-23481600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr22:23478200-23483600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr22:23478200-23483600	Enhancers	Primary B cells from peripheral blood	blood
27	chr22:23478400-23480200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr22:23478400-23481600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr22:23478400-23482000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr22:23478400-23483600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr22:23478400-23483800	Weak transcription	Right Atrium	heart
32	chr22:23478800-23480400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr22:23479000-23480200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr22:23479000-23480400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr22:23479200-23479800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr22:23479200-23480800	Enhancers	NHEK	skin
37	chr22:23479200-23481000	Weak transcription	Liver	Liver
38	chr22:23479200-23481000	Enhancers	Thymus	Thymus
39	chr22:23479200-23481600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr22:23479200-23481600	Enhancers	HMEC	breast
41	chr22:23479400-23480200	Weak transcription	Spleen	Spleen
42	chr22:23479400-23482400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr22:23479400-23482600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr22:23479400-23487400	Weak transcription	Esophagus	oesophagus
45	chr22:23479600-23479800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr22:23479600-23480000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr22:23479600-23480000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
48	chr22:23479600-23480000	Flanking Active TSS	Dnd41	blood
49	chr22:23479600-23480000	Flanking Active TSS	GM12878-XiMat	blood
50	chr22:23479600-23480400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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