Variant report

Variant	rs34522955
Chromosome Location	chrX:74834683-74834684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10944136	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12190603	0.81[ASN][1000 genomes]
rs12212151	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13192974	0.83[AMR][1000 genomes]
rs13207173	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2324817	0.83[AMR][1000 genomes]
rs34795473	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3966881	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4098044	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6454487	0.83[AMR][1000 genomes]
rs6454488	0.83[AMR][1000 genomes]
rs66807489	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7450035	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs791503	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs806529	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9647601	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534539	chrX:74669627-75200415	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2752334	chrX:74787887-75200415	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34522955	SNHG5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74830200-74839800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chrX:74832400-74835000	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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